Predicted to be involved in negative regulation of microtubule depolymerization. Predicted to act upstream of or within negative regulation of cell motility involved in cerebral cortex radial glia guided migration. Predicted to be active in microtubule cytoskeleton. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for BMERB1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = BMERB1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of BMERB1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr16:15,154,533–15,155,239 | 279.6 kb | Distal (>10kb) Multiome | 299 | |
| chr16:15,434,441–15,434,591 | at TSS | At TSS | 208 | |
| chr16:15,434,847–15,435,162 | 373 bp | At TSS | 196 | |
| chr16:15,546,648–15,547,130 | 112.4 kb | Distal (>10kb) Multiome | 20 | |
| chr16:15,590,892–15,591,343 | 156.6 kb | Distal (>10kb) Multiome | 798 | |
| chr16:15,642,538–15,643,550 | 208.7 kb | Distal (>10kb) Multiome | 945 | |
| chr16:15,649,782–15,650,732 | 215.7 kb | Distal (>10kb) Multiome | 776 |
Genomic view of the BMERB1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.