ATP6V0E1
ATPase H+ transporting V0 subunit e1 | M9.2, ATP6H, ATP6V0E

This gene encodes a component of vacuolar ATPase (V-ATPase), a multisubunit enzyme that mediates acidification of eukaryotic intracellular organelles. V-ATPase dependent organelle acidification is necessary for such intracellular processes as protein sorting, zymogen activation, receptor-mediated endocytosis, and synaptic vesicle proton gradient generation. V-ATPase is composed of a cytosolic V1 domain and a transmembrane V0 domain. The V1 domain consists of three A and three B subunits, two G subunits plus the C, D, E, F, and H subunits. The V1 domain contains the ATP catalytic site. The V0 domain consists of five different subunits: a, c, c', c", and d. Additional isoforms of many of the V1 and V0 subunit proteins are encoded by multiple genes or alternatively spliced transcript variants. This encoded protein is possibly part of the V0 subunit. Since two nontranscribed pseudogenes have been found in dog, it is possible that the localization to chromosome 2 for this gene by radiation hybrid mapping is representing a pseudogene. Genomic mapping puts the chromosomal location on 5q35.3. [provided by RefSeq, Jul 2008]

Member of: DE-1
Biological processes 17 terms
Expression (TPM)
ATP6V0E1 — as a Regulated Gene

TFs regulating ATP6V0E1 0 TFs

Transcription factors with Perturb-seq knockdown data for ATP6V0E1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ATP6V0E1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to ATP6V0E1

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ATP6V0E1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr5:172,683,287–172,684,318 299.8 kb Distal (>10kb) Multiome 215
chr5:172,697,353–172,697,964 286.2 kb Distal (>10kb) Multiome 445
chr5:172,700,111–172,700,934 283.3 kb Distal (>10kb) Multiome 131
chr5:172,765,066–172,765,738 218.4 kb Distal (>10kb) Multiome 748
chr5:172,769,970–172,772,642 212.6 kb Distal (>10kb) Multiome 1190
chr5:172,828,888–172,829,516 154.5 kb Distal (>10kb) Multiome 139
chr5:172,833,492–172,835,141 149.6 kb Distal (>10kb) Multiome 673
chr5:172,941,457–172,942,000 42.1 kb Distal (>10kb) Multiome 22
chr5:172,958,380–172,959,872 24.5 kb Distal (>10kb) Multiome 868
chr5:172,983,384–172,984,597 50 bp At TSS Multiome 848
chr5:173,055,699–173,057,854 73.5 kb Distal (>10kb) Multiome 1049
chr5:173,144,311–173,145,555 160.9 kb Distal (>10kb) Multiome HiCAR 967
chr5:173,234,580–173,235,384 251.2 kb Distal (>10kb) Multiome HiCAR 307
chr5:173,245,361–173,246,026 261.9 kb Distal (>10kb) Multiome 109
chr5:173,283,642–173,284,193 300.1 kb Distal (>10kb) Multiome HiCAR 911

Genome Browser

Genomic view of the ATP6V0E1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr5:172,673,287 – 173,294,193
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq