chr9 : 33,007,840 33,008,080
240 bp 14 TFs 1 linked gene
This 240 bp open chromatin element is linked to APTX and is bound by 14 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
APTX 6.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:33,002,840 – 33,013,080
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
14 transcription factors
Source
Cell type
CTCF 10 datasets
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 114 bp overlap
ChIP HEK293 ENCFF498RMM 217 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 150 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 112 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 183 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 195 bp overlap
ChIP endodermal cell ENCFF471YCZ 207 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 199 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 215 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 155 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 209 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 223 bp overlap
ESR1 1 dataset
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 195 bp overlap
FOXA1 1 dataset
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 138 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 240 bp overlap
ChIP DE DE-FOXA2-2 240 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 240 bp overlap
ChIP DE DE-GATA4-2 240 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 240 bp overlap
ChIP DE DE-GATA6-2 240 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 240 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 119 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 240 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 216 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 204 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 240 bp overlap