chr9 : 8,514,873 – 8,515,049
176 bp 4 TFs 0 linked genes
This 176 bp open chromatin element has no linked target genes and is bound by CTCF, RAD21, ZNF462, and ZSCAN5C.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:8,509,873 – 8,520,049
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
4 transcription factors
Source
Cell type
CTCF 66 datasets
ChIP 22Rv1 ENCFF466OXN 176 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 176 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 176 bp overlap
ChIP BE2C ENCFF757SRF 176 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 146 bp overlap
ChIP C4-2B ENCFF821XVN 176 bp overlap
ChIP DND-41 ENCFF913MRA 176 bp overlap
ChIP GM12872 ENCFF697BYI 168 bp overlap
ChIP GM23338 ENCFF531QOI 176 bp overlap
ChIP GM23338 ENCFF772DML 161 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 176 bp overlap
ChIP H1 ENCFF414GZI 176 bp overlap
ChIP H1 ENCFF764RHO 176 bp overlap
ChIP H9 ENCFF152GTF 176 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 173 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 163 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 145 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 166 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 176 bp overlap
ChIP HEK293 ENCFF498RMM 176 bp overlap
ChIP HeLa_dC9Sun-D3AMut_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3AMut_MIR152 143 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 169 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 137 bp overlap
ChIP Loucy ENCFF359TVQ 176 bp overlap
ChIP MCF-7 ENCFF198DQX 159 bp overlap
ChIP MCF-7 ENCFF494VXA 176 bp overlap
ChIP NB4 ENCFF155DNY 176 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 176 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 176 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 176 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 176 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 157 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 176 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 160 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 155 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 162 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 160 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-4h 160 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h 174 bp overlap
ChIP THP-1_siWAPL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-eGFP-Pam3csk-4h 176 bp overlap
ChIP VCaP ENCFF858YQT 176 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 176 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 176 bp overlap
ChIP brain ENCFF163BBN 176 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 176 bp overlap
ChIP chondrocyte ENCFF134ORZ 176 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF267VHH 176 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 176 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF403LNW 176 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 176 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 167 bp overlap
ChIP endodermal cell ENCFF471YCZ 176 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 176 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 167 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 176 bp overlap
ChIP hepatocyte ENCFF263BLJ 176 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 176 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 145 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 101 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 158 bp overlap
ChIP neural progenitor cell ENCFF420RBO 176 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 168 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 121 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 176 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 154 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 176 bp overlap
RAD21 5 datasets
ChIP GP5D GSE51234.RAD21.GP5D 176 bp overlap
ChIP H1 ENCFF698EWO 176 bp overlap
ChIP H1 ENCFF967OJF 176 bp overlap
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 144 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 151 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 176 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 149 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 176 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 169 bp overlap
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