chr1 : 145,601,589 145,601,937
348 bp 5 TFs 2 linked genes
This 348 bp open chromatin element is linked to NBPF25P and GPR89A and is bound by GATA4, GATA6, NCOA2, SMAD2-3, and SMAD2_3.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
NBPF25P 5.9 kb Proximal Proximity
GPR89A 6.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:145,596,589 – 145,606,937
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
5 transcription factors
Source
Cell type
GATA4 2 datasets
ChIP DE DE-GATA4-1 303 bp overlap
ChIP DE DE-GATA4-2 339 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 255 bp overlap
ChIP DE DE-GATA6-2 348 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 272 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 332 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 338 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 284 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 339 bp overlap
NCOA2 1 dataset
ChIP MCF-7 ERP000901.NCOA2.MCF-7 116 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 291 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 347 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 234 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 348 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 275 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 348 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 345 bp overlap