chr1 : 96,675,021 96,675,190
169 bp 4 TFs 1 linked gene
This 169 bp open chromatin element is linked to RPL7P9 and is bound by CTCF, RAD21, SOX2, and ZNF143.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RPL7P9 4.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:96,670,021 – 96,680,190
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
4 transcription factors
Source
Cell type
CTCF 83 datasets
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 169 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 169 bp overlap
ChIP A673 ENCFF123WOM 169 bp overlap
ChIP BE2C ENCFF757SRF 169 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 162 bp overlap
ChIP GM23338 ENCFF531QOI 169 bp overlap
ChIP GM23338 ENCFF772DML 169 bp overlap
ChIP GSC23 GSE139416.CTCF.GSC23 134 bp overlap
ChIP H1 ENCFF230QSV 130 bp overlap
ChIP H1 ENCFF414GZI 169 bp overlap
ChIP H1 ENCFF764RHO 144 bp overlap
ChIP H9 ENCFF152GTF 169 bp overlap
ChIP H9 ENCFF152GTF 118 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 152 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 164 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 169 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 169 bp overlap
ChIP HEK293 ENCFF498RMM 169 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 128 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 151 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 151 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 167 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 169 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 156 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 169 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 169 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 103 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 169 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 120 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 151 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 167 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 157 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 142 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 98 bp overlap
ChIP HepG2 ENCFF127KUP 165 bp overlap
ChIP HepG2 ENCFF348BUL 163 bp overlap
ChIP HepG2 ENCFF668CTD 133 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 169 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 141 bp overlap
ChIP MCF-7 ENCFF139NQI 169 bp overlap
ChIP MCF-7 ENCFF198DQX 169 bp overlap
ChIP MCF-7 ENCFF414SZG 160 bp overlap
ChIP MCF-7 ENCFF494VXA 169 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 169 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 169 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 161 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 163 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 100 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 169 bp overlap
ChIP MCF-7L_t16 GSE108787.CTCF.MCF-7L_t16 152 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 169 bp overlap
ChIP MCF-7_HYPOXIA GSE78113.CTCF.MCF-7_HYPOXIA 169 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 143 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 169 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 169 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 109 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 108 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 169 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 150 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 166 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 165 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 169 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 169 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 169 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 169 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 169 bp overlap
ChIP endodermal cell ENCFF471YCZ 169 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 151 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 169 bp overlap
ChIP fibroblast of mammary gland ENCFF109AZU 169 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 124 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 144 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 158 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 148 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 169 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 163 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 128 bp overlap
ChIP keratinocyte ENCFF046PBT 169 bp overlap
ChIP keratinocyte ENCFF291YDC 169 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 169 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 155 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 110 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 169 bp overlap
ChIP H1 ENCFF967OJF 169 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.RAD21.HEC-1-B_RF-insertion 80 bp overlap
SOX2 1 dataset
ChIP hESC GSE18292.SOX2.hESC 96 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 112 bp overlap