chr5 : 25,200,132 – 25,200,581
449 bp 5 TFs 1 linked gene
This 449 bp open chromatin element is linked to LINC02228 and is bound by ERG, OGG1, POU5F1_M, RORC, and SREBP2.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02228 9.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:25,195,132 – 25,205,581
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
5 transcription factors
Source
Cell type
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 168 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 234 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 278 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 449 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 449 bp overlap
SREBP2 1 dataset
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 321 bp overlap
Huangfu Lab · Publications · Resources · Contact