chr4 : 112,651,652 112,651,795
143 bp 12 TFs 6 linked genes
This 143 bp open chromatin element is linked to 6 target genes and is bound by 12 transcription factors.
Linked Genes
6 genes
Gene Expression Dist. to TSS Distance Link type
MIR302CHG 2.9 kb Proximal Proximity
MIR302B 3.1 kb Proximal Proximity
MIR302C 3.2 kb Proximal Proximity
MIR302A 3.4 kb Proximal Proximity
MIR302D 3.6 kb Proximal Proximity
LARP7 6.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:112,646,652 – 112,656,795
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
12 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 143 bp overlap
CDX2 1 dataset
ChIP intestinal-cell GSE115314.CDX2.intestinal-cell 96 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 132 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 143 bp overlap
ChIP DE DE-FOXA2-2 87 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 55 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-2 56 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 126 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 122 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 104 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 143 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 101 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 143 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 131 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 143 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 143 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 130 bp overlap
RARA 1 dataset
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 88 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 143 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 143 bp overlap