chr3 : 132,027,486 132,027,623
137 bp 4 TFs 1 linked gene
This 137 bp open chromatin element is linked to CPNE4 and is bound by CTCF, GATA4, GATA6, and SOX17_M.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CPNE4 7.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:132,022,486 – 132,032,623
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
4 transcription factors
Source
Cell type
CTCF 1 dataset
ChIP HT-1080 GSE135580.CTCF.HT-1080 52 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 137 bp overlap
ChIP DE DE-GATA4-2 137 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 137 bp overlap
ChIP DE DE-GATA6-2 137 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 137 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 137 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 137 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 137 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 137 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 137 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 137 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 137 bp overlap