chr1 : 55,037,050 55,037,356
306 bp 7 TFs 1 linked gene
This 306 bp open chromatin element is linked to PCSK9 and is bound by 7 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PCSK9 2.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:55,032,050 – 55,042,356
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
7 transcription factors
Source
Cell type
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 306 bp overlap
ChIP DE DE-FOXA2-2 306 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 306 bp overlap
ChIP DE DE-GATA4-2 306 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 306 bp overlap
ChIP DE DE-GATA6-2 306 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 274 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 275 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 279 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 200 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 305 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 149 bp overlap