chr3 : 16,698,457 – 16,698,824
367 bp 5 TFs 1 linked gene
This 367 bp open chromatin element is linked to ENSG00000229271 and is bound by MED1, NANOG, PPARG, RORB, and SMARCA4.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000229271 853 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:16,693,457 – 16,703,824
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
5 transcription factors
Source
Cell type
MED1 1 dataset
ChIP SGBS_TNF GSE64233.MED1.SGBS_TNF 117 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 228 bp overlap
PPARG 1 dataset
ChIP SGBS GSE41629.PPARG.SGBS 76 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 152 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 211 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 224 bp overlap
Huangfu Lab · Publications · Resources · Contact