chrX : 24,655,845 24,656,073
228 bp 4 TFs 1 linked gene
This 228 bp open chromatin element is linked to PCYT1B and is bound by CTCF, RAD21, STAG1, and ZNF121.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PCYT1B 8.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:24,650,845 – 24,661,073
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
4 transcription factors
Source
Cell type
CTCF 67 datasets
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 73 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 56 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 69 bp overlap
ChIP GM12873 ENCFF711LOS 151 bp overlap
ChIP GM12874 ENCSR000DRR.CTCF.GM12874 73 bp overlap
ChIP GM23338 ENCFF531QOI 215 bp overlap
ChIP GM23338 ENCFF772DML 66 bp overlap
ChIP GM23338 ENCFF832KWE 228 bp overlap
ChIP H1 ENCFF764RHO 156 bp overlap
ChIP H9 ENCFF152GTF 228 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 159 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 117 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 140 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 131 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 104 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 137 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 107 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 116 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 78 bp overlap
ChIP HCT116 ENCFF209YMI 158 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 103 bp overlap
ChIP HeLa-S3 ENCFF565UFR 98 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 65 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 228 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 228 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 77 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 67 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 53 bp overlap
ChIP HepG2 ENCFF194VBQ 166 bp overlap
ChIP HepG2 ENCFF348BUL 131 bp overlap
ChIP HepG2 ENCFF757EKU 179 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 99 bp overlap
ChIP K-562 ENCSR000DWE.CTCF.K-562 87 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 57 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 81 bp overlap
ChIP K-562_12040 GSE131349.CTCF.K-562_12040 73 bp overlap
ChIP K-562_5635 GSE131349.CTCF.K-562_5635 74 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 116 bp overlap
ChIP K-562_WT GSE140868.CTCF.K-562_WT 56 bp overlap
ChIP K562 ENCFF400DFR 139 bp overlap
ChIP K562 ENCFF598YSU 164 bp overlap
ChIP MCF-7 ENCFF414SZG 112 bp overlap
ChIP MCF-7 ENCFF494VXA 134 bp overlap
ChIP MCF-7 ENCFF844STM 112 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 176 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 81 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 118 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 93 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 182 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 88 bp overlap
ChIP endodermal cell ENCFF471YCZ 228 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 153 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 228 bp overlap
ChIP hepatocyte ENCFF263BLJ 228 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 60 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 91 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 110 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 101 bp overlap
ChIP neural crest cell ENCFF182LWK 140 bp overlap
ChIP neural progenitor cell ENCFF420RBO 95 bp overlap
ChIP neural progenitor cell ENCFF420RBO 215 bp overlap
ChIP neural progenitor cell ENCFF581WPG 228 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 187 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 80 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 120 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 228 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 216 bp overlap
RAD21 13 datasets
ChIP H1 ENCFF967OJF 153 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 92 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 70 bp overlap
ChIP Hep-G2 ENCSR000EEG.RAD21.Hep-G2 73 bp overlap
ChIP HepG2 ENCFF360ZSW 138 bp overlap
ChIP HepG2 ENCFF906QIS 150 bp overlap
ChIP Ishikawa ENCFF570JVV 151 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 64 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 80 bp overlap
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 87 bp overlap
ChIP K562 ENCFF169SQI 111 bp overlap
ChIP K562 ENCFF634XYR 228 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 117 bp overlap
STAG1 4 datasets
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 88 bp overlap
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 83 bp overlap
ChIP HepG2 ENCFF843EBZ 161 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 59 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 174 bp overlap