ZP3
zona pellucida glycoprotein 3 | ZP3-372, ZP3-424, ZPC, ZP3A, ZP3B

The zona pellucida is an extracellular matrix that surrounds the oocyte and early embryo. It is composed primarily of three or four glycoproteins with various functions during fertilization and preimplantation development. The protein encoded by this gene is a structural component of the zona pellucida and functions in primary binding and induction of the sperm acrosome reaction. The nascent protein contains a N-terminal signal peptide sequence, a conserved ZP domain, a C-terminal consensus furin cleavage site, and a transmembrane domain. It is hypothesized that furin cleavage results in release of the mature protein from the plasma membrane for subsequent incorporation into the zona pellucida matrix. However, the requirement for furin cleavage in this process remains controversial based on mouse studies. A variation in the last exon of this gene has previously served as the basis for an additional ZP3 locus; however, sequence and literature review reveals that there is only one full-length ZP3 locus in the human genome. Another locus encoding a bipartite transcript designated POMZP3 contains a duplication of the last four exons of ZP3, including the above described variation, and maps closely to this gene. [provided by RefSeq, Jul 2008]

Biological processes 45 terms
acrosin binding (GO:0032190)acrosin binding (GO:0032190)binding of sperm to zona pellucida (GO:0007339)binding of sperm to zona pellucida (GO:0007339)binding of sperm to zona pellucida (GO:0007339)binding of sperm to zona pellucida (GO:0007339)blastocyst formation (GO:0001825)carbohydrate binding (GO:0030246)egg coat (GO:0035805)egg coat (GO:0035805)egg coat (GO:0035805)egg coat formation (GO:0035803)egg coat formation (GO:0035803)extracellular matrix (GO:0031012)extracellular matrix (GO:0031012)extracellular matrix structural constituent (GO:0005201)extracellular region (GO:0005576)extracellular region (GO:0005576)extracellular region (GO:0005576)humoral immune response mediated by circulating immunoglobulin (GO:0002455)identical protein binding (GO:0042802)negative regulation of DNA-templated transcription (GO:0045892)negative regulation of binding of sperm to zona pellucida (GO:2000360)oocyte development (GO:0048599)plasma membrane (GO:0005886)plasma membrane (GO:0005886)positive regulation of DNA-templated transcription (GO:0045893)positive regulation of T cell proliferation (GO:0042102)positive regulation of acrosomal vesicle exocytosis (GO:2000368)positive regulation of acrosomal vesicle exocytosis (GO:2000368)positive regulation of acrosome reaction (GO:2000344)positive regulation of acrosome reaction (GO:2000344)positive regulation of antral ovarian follicle growth (GO:2000388)positive regulation of humoral immune response (GO:0002922)positive regulation of inflammatory response (GO:0050729)positive regulation of interleukin-4 production (GO:0032753)positive regulation of leukocyte migration (GO:0002687)positive regulation of ovarian follicle development (GO:2000386)positive regulation of type II interferon production (GO:0032729)positive regulation of type IV hypersensitivity (GO:0001809)protein binding (GO:0005515)receptor ligand activity (GO:0048018)signal transduction (GO:0007165)structural constituent of egg coat (GO:0035804)structural constituent of egg coat (GO:0035804)
Expression (TPM)
ZP3 — as a Regulated Gene

TFs regulating ZP3 0 TFs

Transcription factors with Perturb-seq knockdown data for ZP3. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ZP3 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to ZP3

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ZP3, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr7:76,163,449–76,164,544 233.6 kb Distal (>10kb) Multiome 132
chr7:76,166,338–76,167,166 230.8 kb Distal (>10kb) Multiome 644
chr7:76,177,965–76,178,641 219.2 kb Distal (>10kb) Multiome 670
chr7:76,201,356–76,202,307 195.7 kb Distal (>10kb) Multiome 937
chr7:76,234,695–76,235,681 162.2 kb Distal (>10kb) Multiome 329
chr7:76,259,707–76,261,052 137.1 kb Distal (>10kb) Multiome 332
chr7:76,267,044–76,267,853 130.2 kb Distal (>10kb) Multiome 211
chr7:76,282,299–76,283,220 114.8 kb Distal (>10kb) Multiome 237
chr7:76,291,428–76,292,275 105.7 kb Distal (>10kb) Multiome 767
chr7:76,302,207–76,304,173 95.0 kb Distal (>10kb) Multiome 943
chr7:76,314,028–76,314,686 83.1 kb Distal (>10kb) Multiome 715
chr7:76,317,523–76,319,173 79.3 kb Distal (>10kb) Multiome 840
chr7:76,358,237–76,359,989 38.2 kb Distal (>10kb) Multiome 1036
chr7:76,379,650–76,380,602 17.5 kb Distal (>10kb) Multiome 853
chr7:76,392,882–76,394,121 4.2 kb Proximal (<10kb) Multiome 932
chr7:76,395,928–76,396,741 1.3 kb Proximal (<10kb) Multiome 152
chr7:76,397,187–76,397,970 64 bp At TSS Multiome 496
chr7:76,409,261–76,409,956 12.2 kb Distal (>10kb) Multiome HiCAR 281
chr7:76,510,075–76,510,721 112.8 kb Distal (>10kb) Multiome 201
chr7:76,548,975–76,549,826 151.8 kb Distal (>10kb) Multiome 505

Genome Browser

Genomic view of the ZP3 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr7:76,153,449 – 76,559,826
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq