The zona pellucida is an extracellular matrix that surrounds the oocyte and early embryo. It is composed primarily of three or four glycoproteins with various functions during fertilization and preimplantation development. The protein encoded by this gene is a structural component of the zona pellucida and functions in primary binding and induction of the sperm acrosome reaction. The nascent protein contains a N-terminal signal peptide sequence, a conserved ZP domain, a C-terminal consensus furin cleavage site, and a transmembrane domain. It is hypothesized that furin cleavage results in release of the mature protein from the plasma membrane for subsequent incorporation into the zona pellucida matrix. However, the requirement for furin cleavage in this process remains controversial based on mouse studies. A variation in the last exon of this gene has previously served as the basis for an additional ZP3 locus; however, sequence and literature review reveals that there is only one full-length ZP3 locus in the human genome. Another locus encoding a bipartite transcript designated POMZP3 contains a duplication of the last four exons of ZP3, including the above described variation, and maps closely to this gene. [provided by RefSeq, Jul 2008]
Transcription factors with Perturb-seq knockdown data for ZP3. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ZP3 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ZP3, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr7:76,163,449–76,164,544 | 233.6 kb | Distal (>10kb) Multiome | 132 | |
| chr7:76,166,338–76,167,166 | 230.8 kb | Distal (>10kb) Multiome | 644 | |
| chr7:76,177,965–76,178,641 | 219.2 kb | Distal (>10kb) Multiome | 670 | |
| chr7:76,201,356–76,202,307 | 195.7 kb | Distal (>10kb) Multiome | 937 | |
| chr7:76,234,695–76,235,681 | 162.2 kb | Distal (>10kb) Multiome | 329 | |
| chr7:76,259,707–76,261,052 | 137.1 kb | Distal (>10kb) Multiome | 332 | |
| chr7:76,267,044–76,267,853 | 130.2 kb | Distal (>10kb) Multiome | 211 | |
| chr7:76,282,299–76,283,220 | 114.8 kb | Distal (>10kb) Multiome | 237 | |
| chr7:76,291,428–76,292,275 | 105.7 kb | Distal (>10kb) Multiome | 767 | |
| chr7:76,302,207–76,304,173 | 95.0 kb | Distal (>10kb) Multiome | 943 | |
| chr7:76,314,028–76,314,686 | 83.1 kb | Distal (>10kb) Multiome | 715 | |
| chr7:76,317,523–76,319,173 | 79.3 kb | Distal (>10kb) Multiome | 840 | |
| chr7:76,358,237–76,359,989 | 38.2 kb | Distal (>10kb) Multiome | 1036 | |
| chr7:76,379,650–76,380,602 | 17.5 kb | Distal (>10kb) Multiome | 853 | |
| chr7:76,392,882–76,394,121 | 4.2 kb | Proximal (<10kb) Multiome | 932 | |
| chr7:76,395,928–76,396,741 | 1.3 kb | Proximal (<10kb) Multiome | 152 | |
| chr7:76,397,187–76,397,970 | 64 bp | At TSS Multiome | 496 | |
| chr7:76,409,261–76,409,956 | 12.2 kb | Distal (>10kb) Multiome HiCAR | 281 | |
| chr7:76,510,075–76,510,721 | 112.8 kb | Distal (>10kb) Multiome | 201 | |
| chr7:76,548,975–76,549,826 | 151.8 kb | Distal (>10kb) Multiome | 505 |
Genomic view of the ZP3 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.