This gene encodes a type I integral membrane protein that is localized to the trans-Golgi network, a major sorting station for secretory and membrane proteins. The encoded protein cycles between early endosomes and the trans-Golgi network, and may play a role in exocytic vesicle formation. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Oct 2011]
Transcription factors with Perturb-seq knockdown data for TGOLN2. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = TGOLN2 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of TGOLN2, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr2:85,033,412–85,033,982 | 294.4 kb | Distal (>10kb) Multiome | 100 | |
| chr2:85,066,689–85,067,387 | 260.9 kb | Distal (>10kb) Multiome HiCAR | 352 | |
| chr2:85,119,847–85,120,292 | 207.9 kb | Distal (>10kb) Multiome | 127 | |
| chr2:85,132,493–85,135,747 | 194.8 kb | Distal (>10kb) Multiome | 660 | |
| chr2:85,174,805–85,176,312 | 152.4 kb | Distal (>10kb) Multiome | 399 | |
| chr2:85,178,933–85,179,785 | 148.7 kb | Distal (>10kb) Multiome | 95 | |
| chr2:85,237,653–85,238,609 | 89.9 kb | Distal (>10kb) Multiome | 190 | |
| chr2:85,255,366–85,256,615 | 71.8 kb | Distal (>10kb) Multiome | 414 | |
| chr2:85,285,331–85,285,778 | 42.4 kb | Distal (>10kb) Multiome | 463 | |
| chr2:85,327,503–85,328,538 | 78 bp | At TSS Multiome | 1009 | |
| chr2:85,354,014–85,355,224 | 26.6 kb | Distal (>10kb) Multiome | 962 | |
| chr2:85,413,587–85,414,333 | 85.8 kb | Distal (>10kb) Multiome | 351 | |
| chr2:85,418,133–85,419,210 | 90.6 kb | Distal (>10kb) Multiome | 885 | |
| chr2:85,420,473–85,421,406 | 92.9 kb | Distal (>10kb) Multiome | 853 | |
| chr2:85,437,445–85,438,463 | 109.8 kb | Distal (>10kb) Multiome | 501 | |
| chr2:85,455,501–85,456,436 | 127.9 kb | Distal (>10kb) Multiome | 268 | |
| chr2:85,468,626–85,469,195 | 140.9 kb | Distal (>10kb) Multiome | 496 | |
| chr2:85,537,623–85,540,152 | 209.7 kb | Distal (>10kb) Multiome | 1210 | |
| chr2:85,546,252–85,547,149 | 218.5 kb | Distal (>10kb) Multiome | 418 | |
| chr2:85,561,042–85,561,982 | 233.5 kb | Distal (>10kb) Multiome | 903 | |
| chr2:85,577,411–85,578,045 | 249.6 kb | Distal (>10kb) Multiome | 505 | |
| chr2:85,578,935–85,580,041 | 251.6 kb | Distal (>10kb) Multiome | 275 | |
| chr2:85,584,249–85,584,853 | 256.6 kb | Distal (>10kb) Multiome | 633 | |
| chr2:85,595,068–85,596,226 | 267.6 kb | Distal (>10kb) Multiome | 804 | |
| chr2:85,601,954–85,603,493 | 274.7 kb | Distal (>10kb) Multiome | 852 | |
| chr2:85,611,558–85,612,589 | 284.1 kb | Distal (>10kb) Multiome | 875 | |
| chr2:85,615,831–85,616,609 | 288.2 kb | Distal (>10kb) Multiome | 898 |
Genomic view of the TGOLN2 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.