Enables transcription elongation factor activity. Involved in positive regulation of mitochondrial transcription and regulation of oxidative phosphorylation. Located in mitochondrial nucleoid. Part of ribonucleoprotein complex. Implicated in combined oxidative phosphorylation deficiency. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for TEFM. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = TEFM upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of TEFM, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr17:30,707,918–30,709,425 | 197.6 kb | Distal (>10kb) Multiome | 471 | |
| chr17:30,731,337–30,732,077 | 174.6 kb | Distal (>10kb) Multiome | 352 | |
| chr17:30,824,074–30,825,310 | 81.5 kb | Distal (>10kb) Multiome | 868 | |
| chr17:30,831,761–30,832,403 | 74.2 kb | Distal (>10kb) Multiome | 803 | |
| chr17:30,906,142–30,906,858 | 160 bp | At TSS Multiome | 1033 | |
| chr17:30,921,825–30,922,307 | 15.8 kb | Distal (>10kb) Multiome | 262 | |
| chr17:30,970,780–30,971,531 | 64.9 kb | Distal (>10kb) Multiome | 537 | |
| chr17:31,008,384–31,008,968 | 102.4 kb | Distal (>10kb) Multiome | 415 | |
| chr17:31,094,330–31,095,946 | 188.6 kb | Distal (>10kb) Multiome | 759 |
Genomic view of the TEFM locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.