The Hedgehog signaling pathway plays an important role in early human development. The pathway is a signaling cascade that plays a role in pattern formation and cellular proliferation during development. This gene encodes a negative regulator of the hedgehog signaling pathway. Defects in this gene are a cause of medulloblastoma. Alternative splicing results in multiple transcript variants.[provided by RefSeq, May 2010]
Transcription factors with Perturb-seq knockdown data for SUFU. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = SUFU upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of SUFU, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr10:102,225,881–102,226,551 | 277.7 kb | Distal (>10kb) Multiome | 652 | |
| chr10:102,229,814–102,232,116 | 274.0 kb | Distal (>10kb) Multiome | 689 | |
| chr10:102,240,581–102,242,031 | 262.3 kb | Distal (>10kb) Multiome | 504 | |
| chr10:102,244,918–102,246,010 | 258.6 kb | Distal (>10kb) Multiome | 734 | |
| chr10:102,393,940–102,396,107 | 108.3 kb | Distal (>10kb) Multiome | 912 | |
| chr10:102,399,132–102,400,002 | 104.4 kb | Distal (>10kb) Multiome | 832 | |
| chr10:102,408,600–102,409,538 | 94.9 kb | Distal (>10kb) Multiome | 277 | |
| chr10:102,410,213–102,410,909 | 93.2 kb | Distal (>10kb) Multiome | 148 | |
| chr10:102,418,158–102,422,381 | 84.3 kb | Distal (>10kb) Multiome | 1097 | |
| chr10:102,422,562–102,423,126 | 81.1 kb | Distal (>10kb) Multiome | 721 | |
| chr10:102,431,859–102,432,863 | 71.3 kb | Distal (>10kb) Multiome | 828 | |
| chr10:102,449,444–102,451,250 | 54.2 kb | Distal (>10kb) Multiome | 810 | |
| chr10:102,454,792–102,455,588 | 48.9 kb | Distal (>10kb) Multiome | 159 | |
| chr10:102,460,805–102,462,064 | 42.6 kb | Distal (>10kb) Multiome | 665 | |
| chr10:102,501,628–102,503,235 | 1.8 kb | Proximal (<10kb) Multiome | 738 | |
| chr10:102,503,432–102,504,897 | 18 bp | At TSS Multiome | 684 | |
| chr10:102,641,824–102,646,130 | 141.1 kb | Distal (>10kb) Multiome | 1123 | |
| chr10:102,678,809–102,679,295 | 175.1 kb | Distal (>10kb) Multiome | 476 | |
| chr10:102,713,669–102,715,337 | 210.4 kb | Distal (>10kb) Multiome | 895 | |
| chr10:102,743,388–102,744,547 | 239.8 kb | Distal (>10kb) Multiome | 777 | |
| chr10:102,776,775–102,777,340 | 273.0 kb | Distal (>10kb) Multiome | 419 |
Genomic view of the SUFU locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.