Transcription factors with Perturb-seq knockdown data for SUCLG2-DT. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = SUCLG2-DT upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of SUCLG2-DT, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr3:67,653,783–67,655,256 | 112 bp | At TSS Multiome | 862 | |
| chr3:67,787,939–67,789,068 | 133.8 kb | Distal (>10kb) Multiome | 122 | |
| chr3:67,947,761–67,948,777 | 293.6 kb | Distal (>10kb) Multiome | 151 | |
| chr3:69,079,501–69,080,755 | 1425.6 kb | Distal (>10kb) Multiome HiCAR | 569 | |
| chr3:69,084,409–69,085,904 | 1430.3 kb | Distal (>10kb) Multiome HiCAR | 707 |
Genomic view of the SUCLG2-DT locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.