Predicted to enable protein kinase activity. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for SPEGNB. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = SPEGNB upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of SPEGNB, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr2:219,492,631–219,492,889 | 4.8 kb | Proximal (<10kb) | 107 | |
| chr2:219,495,443–219,495,728 | 2.0 kb | Proximal (<10kb) | 290 | |
| chr2:219,496,628–219,497,255 | 434 bp | At TSS | 114 | |
| chr2:219,497,658–219,499,313 | at TSS | At TSS | 907 | |
| chr2:219,506,707–219,507,641 | 9.0 kb | Proximal (<10kb) | 205 |
Genomic view of the SPEGNB locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.