Transcription factors with Perturb-seq knockdown data for SNHG18. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = SNHG18 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of SNHG18, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr5:9,544,304–9,548,008 | 39 bp | At TSS Multiome | 569 | |
| chr5:9,561,722–9,562,710 | 16.0 kb | Distal (>10kb) Multiome | 232 | |
| chr5:9,598,497–9,600,196 | 53.4 kb | Distal (>10kb) Multiome | 168 | |
| chr5:9,600,901–9,601,850 | 55.1 kb | Distal (>10kb) Multiome | 129 | |
| chr5:9,814,975–9,815,627 | 269.2 kb | Distal (>10kb) Multiome | 94 | |
| chr5:9,829,326–9,830,349 | 283.8 kb | Distal (>10kb) Multiome | 205 | |
| chr5:9,832,813–9,833,369 | 286.8 kb | Distal (>10kb) Multiome | 55 |
Genomic view of the SNHG18 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.