SLC43A3
solute carrier family 43 member 3 | DKFZp762A227, Eeg1, FOAP-13, PRO1659, SEEEG-1
SLC43A3 — as a Regulated Gene

TFs regulating SLC43A3 0 TFs

Transcription factors with Perturb-seq knockdown data for SLC43A3. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = SLC43A3 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to SLC43A3

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of SLC43A3, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr11:57,212,992–57,214,202 213.6 kb Distal (>10kb) Multiome 248
chr11:57,236,823–57,238,006 189.6 kb Distal (>10kb) Multiome 256
chr11:57,242,064–57,242,828 184.6 kb Distal (>10kb) Multiome 232
chr11:57,277,829–57,278,561 149.0 kb Distal (>10kb) Multiome 338
chr11:57,310,924–57,312,111 115.6 kb Distal (>10kb) Multiome 620
chr11:57,323,847–57,325,914 102.1 kb Distal (>10kb) Multiome 790
chr11:57,335,065–57,336,267 91.3 kb Distal (>10kb) Multiome 689
chr11:57,345,508–57,346,149 81.3 kb Distal (>10kb) Multiome 241
chr11:57,349,624–57,350,269 77.1 kb Distal (>10kb) Multiome 357
chr11:57,424,742–57,425,205 1.9 kb Proximal (<10kb) 487
chr11:57,426,113–57,427,448 21 bp At TSS Multiome 451
chr11:57,457,029–57,457,825 30.4 kb Distal (>10kb) Multiome 458
chr11:57,460,127–57,461,576 33.5 kb Distal (>10kb) Multiome 418
chr11:57,480,236–57,481,014 53.4 kb Distal (>10kb) Multiome 300
chr11:57,482,336–57,483,518 56.0 kb Distal (>10kb) Multiome 338
chr11:57,493,430–57,494,126 66.6 kb Distal (>10kb) Multiome 521
chr11:57,499,261–57,500,331 72.7 kb Distal (>10kb) Multiome 548
chr11:57,514,003–57,516,118 87.4 kb Distal (>10kb) Multiome 833
chr11:57,530,326–57,531,572 103.8 kb Distal (>10kb) Multiome 824
chr11:57,567,377–57,568,664 141.0 kb Distal (>10kb) Multiome 665
chr11:57,597,419–57,598,821 171.0 kb Distal (>10kb) Multiome 359
chr11:57,637,508–57,640,656 211.1 kb Distal (>10kb) Multiome 699
chr11:57,644,541–57,645,304 217.9 kb Distal (>10kb) Multiome 237
chr11:57,646,682–57,652,802 222.8 kb Distal (>10kb) Multiome 580
chr11:57,656,843–57,658,231 230.5 kb Distal (>10kb) Multiome 827
chr11:57,666,634–57,668,805 240.7 kb Distal (>10kb) Multiome 958
chr11:57,711,417–57,713,054 285.2 kb Distal (>10kb) Multiome 857

Genome Browser

Genomic view of the SLC43A3 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr11:57,202,992 – 57,723,054
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq