RPL7A
ribosomal protein L7a | L7A, SURF3, TRUP, eL8

Cytoplasmic ribosomes, organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L7AE family of ribosomal proteins. It can interact with a subclass of nuclear hormone receptors, including thyroid hormone receptor, and inhibit their ability to transactivate by preventing their binding to their DNA response elements. This gene is included in the surfeit gene cluster, a group of very tightly linked genes that do not share sequence similarity. It is co-transcribed with the U24, U36a, U36b, and U36c small nucleolar RNA genes, which are located in its second, fifth, fourth, and sixth introns, respectively. This gene rearranges with the trk proto-oncogene to form the chimeric oncogene trk-2h, which encodes an oncoprotein consisting of the N terminus of ribosomal protein L7a fused to the receptor tyrosine kinase domain of trk. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Jul 2008]

Member of: DE-1 DE-1.1
Biological processes 40 terms
Expression (TPM)
RPL7A — as a Regulated Gene

TFs regulating RPL7A 0 TFs

Transcription factors with Perturb-seq knockdown data for RPL7A. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = RPL7A upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to RPL7A

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of RPL7A, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr9:133,059,688–133,060,833 287.7 kb Distal (>10kb) Multiome 222
chr9:133,120,589–133,121,652 226.9 kb Distal (>10kb) Multiome 599
chr9:133,144,161–133,144,920 203.6 kb Distal (>10kb) Multiome 776
chr9:133,147,412–133,149,938 198.8 kb Distal (>10kb) Multiome 979
chr9:133,163,575–133,164,128 184.3 kb Distal (>10kb) Multiome HiCAR 308
chr9:133,238,117–133,239,420 109.6 kb Distal (>10kb) Multiome 620
chr9:133,335,737–133,336,702 12.0 kb Distal (>10kb) Multiome HiCAR 1038
chr9:133,347,434–133,348,830 61 bp At TSS Multiome 893
chr9:133,351,969–133,352,293 3.8 kb Proximal (<10kb) 435
chr9:133,356,029–133,357,223 8.4 kb Proximal (<10kb) Multiome 648
chr9:133,375,394–133,376,740 28.0 kb Distal (>10kb) Multiome 834
chr9:133,417,747–133,418,516 69.9 kb Distal (>10kb) Multiome 1015
chr9:133,428,444–133,429,113 80.5 kb Distal (>10kb) Multiome 255
chr9:133,429,621–133,430,196 81.7 kb Distal (>10kb) Multiome 197
chr9:133,458,883–133,460,984 111.6 kb Distal (>10kb) Multiome 835
chr9:133,478,485–133,479,696 131.0 kb Distal (>10kb) Multiome 653
chr9:133,534,455–133,535,168 186.5 kb Distal (>10kb) Multiome 295
chr9:133,608,924–133,609,730 261.2 kb Distal (>10kb) Multiome 411

Genome Browser

Genomic view of the RPL7A locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr9:133,049,688 – 133,619,730
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq