The protein encoded by this gene is a helicase that is important for genome stability. The encoded protein also prevents aberrant homologous recombination by displacing RAD51 from ssDNA. Three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2011]
Transcription factors with Perturb-seq knockdown data for RECQL5. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = RECQL5 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of RECQL5, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr17:75,393,479–75,394,300 | 273.3 kb | Distal (>10kb) Multiome | 834 | |
| chr17:75,404,856–75,406,161 | 261.4 kb | Distal (>10kb) Multiome | 917 | |
| chr17:75,456,149–75,457,264 | 210.6 kb | Distal (>10kb) Multiome | 865 | |
| chr17:75,481,081–75,481,680 | 185.8 kb | Distal (>10kb) Multiome | 64 | |
| chr17:75,514,425–75,517,171 | 151.5 kb | Distal (>10kb) Multiome | 1158 | |
| chr17:75,524,764–75,527,160 | 141.7 kb | Distal (>10kb) Multiome | 951 | |
| chr17:75,549,465–75,550,388 | 117.2 kb | Distal (>10kb) Multiome | 602 | |
| chr17:75,587,697–75,590,735 | 77.8 kb | Distal (>10kb) Multiome | 744 | |
| chr17:75,633,694–75,634,328 | 33.1 kb | Distal (>10kb) Multiome | 559 | |
| chr17:75,666,763–75,667,767 | 87 bp | At TSS Multiome | 783 | |
| chr17:75,720,933–75,721,693 | 54.2 kb | Distal (>10kb) Multiome | 509 | |
| chr17:75,753,534–75,754,285 | 86.7 kb | Distal (>10kb) Multiome | 699 | |
| chr17:75,764,621–75,765,674 | 98.0 kb | Distal (>10kb) Multiome | 769 | |
| chr17:75,778,786–75,780,191 | 112.7 kb | Distal (>10kb) Multiome | 1118 | |
| chr17:75,784,060–75,785,640 | 117.7 kb | Distal (>10kb) Multiome | 1176 | |
| chr17:75,827,420–75,828,293 | 160.6 kb | Distal (>10kb) Multiome | 404 | |
| chr17:75,830,158–75,830,695 | 163.2 kb | Distal (>10kb) Multiome | 190 | |
| chr17:75,832,912–75,833,396 | 166.0 kb | Distal (>10kb) Multiome | 104 | |
| chr17:75,845,103–75,845,662 | 178.2 kb | Distal (>10kb) Multiome | 703 | |
| chr17:75,854,955–75,856,363 | 188.3 kb | Distal (>10kb) Multiome | 1038 | |
| chr17:75,877,486–75,878,900 | 210.9 kb | Distal (>10kb) Multiome | 884 | |
| chr17:75,896,392–75,897,754 | 229.8 kb | Distal (>10kb) Multiome | 831 | |
| chr17:75,904,371–75,905,532 | 237.9 kb | Distal (>10kb) Multiome | 1045 | |
| chr17:75,940,734–75,941,471 | 273.9 kb | Distal (>10kb) Multiome | 982 |
Genomic view of the RECQL5 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.