cAMP is a signaling molecule important for a variety of cellular functions. cAMP exerts its effects by activating the cAMP-dependent protein kinase, which transduces the signal through phosphorylation of different target proteins. The inactive kinase holoenzyme is a tetramer composed of two regulatory and two catalytic subunits. cAMP causes the dissociation of the inactive holoenzyme into a dimer of regulatory subunits bound to four cAMP and two free monomeric catalytic subunits. Four different regulatory subunits and three catalytic subunits have been identified in humans. This gene encodes one of the regulatory subunits. This protein was found to be a tissue-specific extinguisher that down-regulates the expression of seven liver genes in hepatoma x fibroblast hybrids. Mutations in this gene cause Carney complex (CNC). This gene can fuse to the RET protooncogene by gene rearrangement and form the thyroid tumor-specific chimeric oncogene known as PTC2. A nonconventional nuclear localization sequence (NLS) has been found for this protein which suggests a role in DNA replication via the protein serving as a nuclear transport protein for the second subunit of the Replication Factor C (RFC40). Several alternatively spliced transcript variants encoding two different isoforms have been observed. [provided by RefSeq, Jan 2013]
Transcription factors with Perturb-seq knockdown data for PRKAR1A. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = PRKAR1A upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of PRKAR1A, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr17:68,247,371–68,248,543 | 264.0 kb | Distal (>10kb) Multiome | 986 | |
| chr17:68,291,089–68,292,878 | 220.5 kb | Distal (>10kb) Multiome | 972 | |
| chr17:68,456,319–68,458,376 | 54.3 kb | Distal (>10kb) Multiome | 914 | |
| chr17:68,462,644–68,463,284 | 48.9 kb | Distal (>10kb) Multiome | 394 | |
| chr17:68,511,401–68,513,461 | 372 bp | At TSS Multiome | 1112 | |
| chr17:68,599,584–68,601,475 | 88.4 kb | Distal (>10kb) Multiome | 707 | |
| chr17:68,700,732–68,701,756 | 189.2 kb | Distal (>10kb) Multiome | 188 | |
| chr17:68,732,063–68,732,967 | 220.5 kb | Distal (>10kb) Multiome | 284 | |
| chr17:68,759,447–68,760,388 | 247.9 kb | Distal (>10kb) Multiome HiCAR | 801 | |
| chr17:68,777,450–68,779,000 | 266.4 kb | Distal (>10kb) Multiome | 533 |
Genomic view of the PRKAR1A locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.