PLEKHG3
pleckstrin homology and RhoGEF domain containing G3 | ARHGEF43, KIAA0599
PLEKHG3 — as a Regulated Gene

TFs regulating PLEKHG3 0 TFs

Transcription factors with Perturb-seq knockdown data for PLEKHG3. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = PLEKHG3 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to PLEKHG3

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of PLEKHG3, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr14:64,465,087–64,466,161 239.0 kb Distal (>10kb) Multiome 490
chr14:64,502,980–64,505,716 200.6 kb Distal (>10kb) Multiome 1045
chr14:64,508,924–64,509,409 195.2 kb Distal (>10kb) Multiome 117
chr14:64,539,520–64,541,644 164.0 kb Distal (>10kb) Multiome 722
chr14:64,549,785–64,550,422 154.4 kb Distal (>10kb) Multiome 234
chr14:64,645,238–64,645,989 58.8 kb Distal (>10kb) Multiome 252
chr14:64,657,975–64,659,082 45.8 kb Distal (>10kb) Multiome 104
chr14:64,688,830–64,689,973 15.3 kb Distal (>10kb) Multiome 173
chr14:64,702,676–64,705,752 11 bp At TSS Multiome 771
chr14:64,706,578–64,707,299 2.2 kb Proximal (<10kb) 337
chr14:64,708,103–64,708,910 4.0 kb Proximal (<10kb) Multiome 355
chr14:64,715,550–64,715,810 at TSS At TSS 107
chr14:64,715,917–64,716,184 215 bp At TSS 83
chr14:64,716,808–64,717,090 1.1 kb Proximal (<10kb) 197
chr14:64,718,421–64,718,816 2.7 kb Proximal (<10kb) 19
chr14:64,764,629–64,765,271 60.5 kb Distal (>10kb) Multiome HiCAR 313
chr14:64,823,107–64,823,713 119.0 kb Distal (>10kb) Multiome 316
chr14:64,879,129–64,880,883 176.0 kb Distal (>10kb) Multiome 485
chr14:64,914,197–64,914,885 210.0 kb Distal (>10kb) Multiome 741
chr14:64,971,572–64,972,862 267.9 kb Distal (>10kb) Multiome 360
chr14:64,986,666–64,987,558 282.6 kb Distal (>10kb) Multiome 890

Genome Browser

Genomic view of the PLEKHG3 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr14:64,455,087 – 64,997,558
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq