PHKG2
phosphorylase kinase catalytic subunit gamma 2

Phosphorylase kinase is a polymer of 16 subunits, four each of alpha, beta, gamma and delta. The alpha subunit includes the skeletal muscle and hepatic isoforms, encoded by two different genes. The beta subunit is the same in both the muscle and hepatic isoforms, and encoded by one gene. The gamma subunit also includes the skeletal muscle and hepatic isoforms, and the hepatic isoform is encoded by this gene. The delta subunit is a calmodulin and can be encoded by three different genes. The gamma subunits contain the active site of the enzyme, whereas the alpha and beta subunits have regulatory functions controlled by phosphorylation. The delta subunit mediates the dependence of the enzyme on calcium concentration. Mutations in this gene cause glycogen storage disease type 9C, also known as autosomal liver glycogenosis. Alternatively spliced transcript variants encoding different isoforms have been identified in this gene.[provided by RefSeq, Feb 2010]

Biological processes 27 terms
Expression (TPM)
PHKG2 — as a Regulated Gene

TFs regulating PHKG2 0 TFs

Transcription factors with Perturb-seq knockdown data for PHKG2. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = PHKG2 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to PHKG2

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of PHKG2, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr16:30,526,068–30,527,896 221.0 kb Distal (>10kb) Multiome 1004
chr16:30,534,370–30,535,460 213.5 kb Distal (>10kb) Multiome 957
chr16:30,557,913–30,558,847 189.9 kb Distal (>10kb) Multiome 1025
chr16:30,571,001–30,572,505 176.4 kb Distal (>10kb) Multiome 950
chr16:30,585,243–30,586,223 162.6 kb Distal (>10kb) Multiome 588
chr16:30,609,586–30,610,748 138.0 kb Distal (>10kb) Multiome 1030
chr16:30,634,070–30,634,986 114.0 kb Distal (>10kb) Multiome 907
chr16:30,650,029–30,651,831 97.7 kb Distal (>10kb) Multiome 992
chr16:30,657,638–30,659,894 90.1 kb Distal (>10kb) Multiome 1053
chr16:30,677,814–30,678,622 70.2 kb Distal (>10kb) Multiome 177
chr16:30,697,755–30,699,614 49.3 kb Distal (>10kb) Multiome 1153
chr16:30,747,864–30,748,943 44 bp At TSS Multiome 824
chr16:30,761,380–30,762,606 13.8 kb Distal (>10kb) Multiome 885
chr16:30,774,965–30,776,186 27.1 kb Distal (>10kb) Multiome 1025
chr16:30,786,385–30,788,019 38.8 kb Distal (>10kb) Multiome 885
chr16:30,805,468–30,806,187 57.3 kb Distal (>10kb) Multiome 969
chr16:30,814,045–30,814,733 66.1 kb Distal (>10kb) Multiome 995
chr16:30,841,062–30,841,882 93.2 kb Distal (>10kb) Multiome 49
chr16:30,874,866–30,875,643 126.9 kb Distal (>10kb) Multiome 1108
chr16:30,893,485–30,894,587 145.8 kb Distal (>10kb) Multiome 950
chr16:30,895,854–30,897,426 148.7 kb Distal (>10kb) Multiome 822
chr16:30,901,969–30,902,794 154.0 kb Distal (>10kb) Multiome 579
chr16:30,921,611–30,925,097 175.0 kb Distal (>10kb) Multiome 1132
chr16:30,927,705–30,928,596 179.8 kb Distal (>10kb) Multiome 274
chr16:30,941,803–30,942,254 193.7 kb Distal (>10kb) Multiome 507
chr16:30,947,471–30,950,635 201.8 kb Distal (>10kb) Multiome 1066
chr16:30,953,370–30,954,135 205.4 kb Distal (>10kb) Multiome 499
chr16:30,956,960–30,958,498 209.3 kb Distal (>10kb) Multiome 1022
chr16:30,984,837–30,985,709 236.8 kb Distal (>10kb) Multiome 787
chr16:30,996,877–30,998,001 249.0 kb Distal (>10kb) Multiome 759
chr16:31,010,379–31,011,032 262.3 kb Distal (>10kb) Multiome 117
chr16:31,032,789–31,034,448 285.1 kb Distal (>10kb) Multiome 1047
chr16:31,041,996–31,042,665 293.9 kb Distal (>10kb) Multiome 213

Genome Browser

Genomic view of the PHKG2 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr16:30,516,068 – 31,052,665
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq