PCSK6
proprotein convertase subtilisin/kexin type 6 | SPC4, PACE4

This gene encodes a member of the subtilisin-like proprotein convertase family, which includes proteases that process protein and peptide precursors trafficking through regulated or constitutive branches of the secretory pathway. The encoded protein undergoes an initial autocatalytic processing event in the ER to generate a heterodimer which exits the ER and sorts to the trans-Golgi network where a second autocatalytic event takes place and the catalytic activity is acquired. The encoded protease is constitutively secreted into the extracellular matrix and expressed in many tissues, including neuroendocrine, liver, gut, and brain. This gene encodes one of the seven basic amino acid-specific members which cleave their substrates at single or paired basic residues. Some of its substrates include transforming growth factor beta related proteins, proalbumin, and von Willebrand factor. This gene is thought to play a role in tumor progression and left-right patterning. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Feb 2014]

Member of: DE-5
Biological processes 35 terms
Expression (TPM)
PCSK6 — as a Regulated Gene

TFs regulating PCSK6 0 TFs

Transcription factors with Perturb-seq knockdown data for PCSK6. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = PCSK6 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to PCSK6

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of PCSK6, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr15:101,201,405–101,201,942 288.1 kb Distal (>10kb) Multiome 276
chr15:101,250,886–101,252,530 237.7 kb Distal (>10kb) Multiome 729
chr15:101,276,817–101,277,913 212.2 kb Distal (>10kb) Multiome 748
chr15:101,294,732–101,295,714 194.5 kb Distal (>10kb) Multiome 987
chr15:101,488,293–101,489,120 623 bp At TSS 456
chr15:101,489,250–101,490,332 83 bp At TSS Multiome 422
chr15:101,615,676–101,616,370 126.4 kb Distal (>10kb) Multiome 506
chr15:101,651,697–101,653,159 162.6 kb Distal (>10kb) Multiome 1015
chr15:101,723,842–101,725,054 234.7 kb Distal (>10kb) Multiome 957

Genome Browser

Genomic view of the PCSK6 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr15:101,191,405 – 101,735,054
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq