This gene encodes a member of the subtilisin-like proprotein convertase family, which includes proteases that process protein and peptide precursors trafficking through regulated or constitutive branches of the secretory pathway. The encoded protein undergoes an initial autocatalytic processing event in the ER to generate a heterodimer which exits the ER and sorts to subcellular compartments where a second autocatalytic even takes place and the catalytic activity is acquired. The protease is packaged into and activated in dense core secretory granules and expressed in the neuroendocrine system and brain. This gene encodes one of the seven basic amino acid-specific members which cleave their substrates at single or paired basic residues. It functions in the proteolytic activation of polypeptide hormones and neuropeptides precursors. Mutations in this gene have been associated with susceptibility to obesity and proprotein convertase 1/3 deficiency. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene [provided by RefSeq, Jan 2014]
Transcription factors with Perturb-seq knockdown data for PCSK1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = PCSK1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of PCSK1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr5:95,858,584–95,859,414 | 574.3 kb | Distal (>10kb) Multiome HiCAR | 793 | |
| chr5:96,150,037–96,151,059 | 282.9 kb | Distal (>10kb) Multiome | 134 | |
| chr5:96,170,598–96,171,212 | 262.4 kb | Distal (>10kb) Multiome | 86 | |
| chr5:96,171,780–96,172,635 | 261.1 kb | Distal (>10kb) Multiome | 107 | |
| chr5:96,431,257–96,433,483 | 483 bp | At TSS Multiome | 402 | |
| chr5:96,434,024–96,435,283 | 1.2 kb | Proximal (<10kb) Multiome | 541 | |
| chr5:96,661,819–96,663,768 | 228.9 kb | Distal (>10kb) Multiome | 856 | |
| chr5:96,702,491–96,703,472 | 269.6 kb | Distal (>10kb) Multiome | 828 |
Genomic view of the PCSK1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.