PCSK1
proprotein convertase subtilisin/kexin type 1 | PC1, PC1/3, PC3, SPC3, NEC1

This gene encodes a member of the subtilisin-like proprotein convertase family, which includes proteases that process protein and peptide precursors trafficking through regulated or constitutive branches of the secretory pathway. The encoded protein undergoes an initial autocatalytic processing event in the ER to generate a heterodimer which exits the ER and sorts to subcellular compartments where a second autocatalytic even takes place and the catalytic activity is acquired. The protease is packaged into and activated in dense core secretory granules and expressed in the neuroendocrine system and brain. This gene encodes one of the seven basic amino acid-specific members which cleave their substrates at single or paired basic residues. It functions in the proteolytic activation of polypeptide hormones and neuropeptides precursors. Mutations in this gene have been associated with susceptibility to obesity and proprotein convertase 1/3 deficiency. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene [provided by RefSeq, Jan 2014]

Developmental clusters: GC3
Biological processes 25 terms
Expression (TPM)
PCSK1 — as a Regulated Gene

TFs regulating PCSK1 0 TFs

Transcription factors with Perturb-seq knockdown data for PCSK1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = PCSK1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to PCSK1

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of PCSK1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr5:95,858,584–95,859,414 574.3 kb Distal (>10kb) Multiome HiCAR 793
chr5:96,150,037–96,151,059 282.9 kb Distal (>10kb) Multiome 134
chr5:96,170,598–96,171,212 262.4 kb Distal (>10kb) Multiome 86
chr5:96,171,780–96,172,635 261.1 kb Distal (>10kb) Multiome 107
chr5:96,431,257–96,433,483 483 bp At TSS Multiome 402
chr5:96,434,024–96,435,283 1.2 kb Proximal (<10kb) Multiome 541
chr5:96,661,819–96,663,768 228.9 kb Distal (>10kb) Multiome 856
chr5:96,702,491–96,703,472 269.6 kb Distal (>10kb) Multiome 828

Genome Browser

Genomic view of the PCSK1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr5:95,848,584 – 96,713,472
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq