This gene encodes a member of the nidogen family of basement membrane glycoproteins. The protein interacts with several other components of basement membranes, and may play a role in cell interactions with the extracellular matrix. [provided by RefSeq, Jul 2008]
Transcription factors with Perturb-seq knockdown data for NID1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = NID1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of NID1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr1:235,866,120–235,867,793 | 198.1 kb | Distal (>10kb) Multiome | 845 | |
| chr1:235,971,561–235,972,553 | 93.1 kb | Distal (>10kb) Multiome | 595 | |
| chr1:236,063,919–236,065,936 | 38 bp | At TSS Multiome | 930 | |
| chr1:236,140,574–236,141,829 | 75.8 kb | Distal (>10kb) Multiome | 321 | |
| chr1:236,141,986–236,143,622 | 77.4 kb | Distal (>10kb) Multiome | 517 | |
| chr1:236,280,771–236,282,629 | 217.0 kb | Distal (>10kb) Multiome | 881 |
Genomic view of the NID1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.