Transcription factors with Perturb-seq knockdown data for NEUROG2-AS1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = NEUROG2-AS1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of NEUROG2-AS1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr4:112,509,466–112,511,736 | 3.7 kb | Proximal (<10kb) | 299 | |
| chr4:112,514,209–112,514,384 | 1.0 kb | Proximal (<10kb) | 47 | |
| chr4:112,514,488–112,516,977 | at TSS | At TSS | 586 | |
| chr4:112,517,295–112,517,714 | 1.9 kb | Proximal (<10kb) | 127 | |
| chr4:112,520,189–112,520,573 | 4.8 kb | Proximal (<10kb) | 87 | |
| chr4:112,520,740–112,521,387 | 5.3 kb | Proximal (<10kb) | 117 | |
| chr4:112,522,782–112,524,704 | 7.4 kb | Proximal (<10kb) | 638 |
Genomic view of the NEUROG2-AS1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.