NADH:ubiquinone oxidoreductase (complex I) catalyzes the transfer of electrons from NADH to ubiquinone (coenzyme Q) in the first step of the mitochondrial respiratory chain, resulting in the translocation of protons across the inner mitochondrial membrane. This gene encodes a complex I assembly factor. Mutations in this gene cause progressive encephalopathy resulting from mitochondrial complex I deficiency. [provided by RefSeq, Jul 2008]
Transcription factors with Perturb-seq knockdown data for NDUFAF2. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = NDUFAF2 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of NDUFAF2, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr5:60,699,432–60,700,719 | 245.1 kb | Distal (>10kb) Multiome HiCAR | 1005 | |
| chr5:60,797,358–60,798,212 | 147.3 kb | Distal (>10kb) Multiome | 104 | |
| chr5:60,842,894–60,844,886 | 100.9 kb | Distal (>10kb) Multiome | 755 | |
| chr5:60,854,444–60,855,160 | 90.4 kb | Distal (>10kb) Multiome | 164 | |
| chr5:60,944,760–60,946,207 | 25 bp | At TSS Multiome | 759 | |
| chr5:61,161,875–61,163,757 | 217.3 kb | Distal (>10kb) Multiome | 985 | |
| chr5:61,168,830–61,169,511 | 224.0 kb | Distal (>10kb) Multiome | 120 |
Genomic view of the NDUFAF2 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.