Transcription factors with Perturb-seq knockdown data for MYCBP2-AS1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = MYCBP2-AS1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of MYCBP2-AS1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr13:76,884,124–76,887,820 | 140.4 kb | Distal (>10kb) Multiome | 744 | |
| chr13:76,979,798–76,980,501 | 46.5 kb | Distal (>10kb) Multiome | 498 | |
| chr13:76,991,141–76,993,015 | 34.7 kb | Distal (>10kb) Multiome | 951 | |
| chr13:77,025,218–77,025,707 | 1.1 kb | Proximal (<10kb) | 85 | |
| chr13:77,026,148–77,027,636 | 432 bp | At TSS Multiome | 762 | |
| chr13:77,047,482–77,049,282 | 21.3 kb | Distal (>10kb) Multiome | 304 | |
| chr13:77,325,949–77,327,619 | 300.4 kb | Distal (>10kb) Multiome | 884 |
Genomic view of the MYCBP2-AS1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.