Transcription factors with Perturb-seq knockdown data for MT1JP. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = MT1JP upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of MT1JP, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr16:56,625,188–56,625,919 | 9.9 kb | Proximal (<10kb) | 474 | |
| chr16:56,632,101–56,632,676 | 3.1 kb | Proximal (<10kb) | 180 | |
| chr16:56,638,359–56,638,738 | 2.5 kb | Proximal (<10kb) | 252 | |
| chr16:56,643,360–56,643,746 | 7.5 kb | Proximal (<10kb) | 373 |
Genomic view of the MT1JP locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.