MICU3
mitochondrial calcium uptake 3 | DKFZp313A0139, EFHA2
MICU3 — as a Regulated Gene

TFs regulating MICU3 0 TFs

Transcription factors with Perturb-seq knockdown data for MICU3. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = MICU3 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to MICU3

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of MICU3, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr8:16,861,239–16,862,195 165.6 kb Distal (>10kb) Multiome 98
chr8:17,000,704–17,002,791 25.5 kb Distal (>10kb) Multiome 476
chr8:17,018,805–17,019,161 8.1 kb Proximal (<10kb) 30
chr8:17,026,598–17,028,107 35 bp At TSS Multiome 783
chr8:17,155,620–17,157,352 128.9 kb Distal (>10kb) Multiome 722
chr8:17,185,410–17,186,108 158.5 kb Distal (>10kb) Multiome 170
chr8:17,246,012–17,247,955 219.4 kb Distal (>10kb) Multiome 946

Genome Browser

Genomic view of the MICU3 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr8:16,851,239 – 17,257,955
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq