Transcription factors with Perturb-seq knockdown data for LINC01569. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = LINC01569 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of LINC01569, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr16:4,115,028–4,117,244 | 137.2 kb | Distal (>10kb) Multiome | 659 | |
| chr16:4,183,149–4,184,737 | 69.8 kb | Distal (>10kb) Multiome | 944 | |
| chr16:4,244,460–4,244,980 | 9.2 kb | Proximal (<10kb) Multiome | 290 | |
| chr16:4,248,382–4,248,656 | 5.1 kb | Proximal (<10kb) | 27 | |
| chr16:4,253,312–4,254,436 | 157 bp | At TSS Multiome | 960 | |
| chr16:4,261,499–4,261,890 | 7.7 kb | Proximal (<10kb) | 306 | |
| chr16:4,263,483–4,264,402 | 10.0 kb | Distal (>10kb) Multiome | 258 | |
| chr16:4,271,070–4,274,312 | 20.2 kb | Distal (>10kb) Multiome | 1130 | |
| chr16:4,293,681–4,294,322 | 40.2 kb | Distal (>10kb) Multiome | 385 | |
| chr16:4,307,236–4,308,275 | 54.0 kb | Distal (>10kb) Multiome | 635 | |
| chr16:4,309,629–4,310,195 | 56.2 kb | Distal (>10kb) Multiome | 351 | |
| chr16:4,315,041–4,316,747 | 62.0 kb | Distal (>10kb) Multiome | 520 | |
| chr16:4,327,446–4,328,634 | 74.5 kb | Distal (>10kb) Multiome | 495 | |
| chr16:4,350,579–4,351,773 | 97.6 kb | Distal (>10kb) Multiome | 674 | |
| chr16:4,371,473–4,372,791 | 118.0 kb | Distal (>10kb) Multiome | 617 | |
| chr16:4,402,485–4,403,104 | 149.0 kb | Distal (>10kb) Multiome | 450 | |
| chr16:4,415,818–4,417,201 | 162.9 kb | Distal (>10kb) Multiome | 681 | |
| chr16:4,425,392–4,426,322 | 171.9 kb | Distal (>10kb) Multiome | 881 | |
| chr16:4,474,111–4,474,929 | 220.8 kb | Distal (>10kb) Multiome | 626 | |
| chr16:4,476,027–4,477,237 | 222.6 kb | Distal (>10kb) Multiome | 841 | |
| chr16:4,537,639–4,538,998 | 284.9 kb | Distal (>10kb) Multiome | 1087 |
Genomic view of the LINC01569 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.