Transcription factors with Perturb-seq knockdown data for LINC01266. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = LINC01266 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of LINC01266, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr3:236,781–237,608 | 299.0 kb | Distal (>10kb) Multiome | 105 | |
| chr3:535,589–536,667 | 68 bp | At TSS Multiome | 173 | |
| chr3:541,148–541,641 | 5.0 kb | Proximal (<10kb) | 19 | |
| chr3:2,097,669–2,100,540 | 1562.5 kb | Distal (>10kb) Multiome HiCAR | 481 |
Genomic view of the LINC01266 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.