LAMB2
laminin subunit beta 2 | NPHS5, LAMS

Laminins, a family of extracellular matrix glycoproteins, are the major noncollagenous constituent of basement membranes. They have been implicated in a wide variety of biological processes including cell adhesion, differentiation, migration, signaling, neurite outgrowth and metastasis. Laminins, composed of 3 non identical chains: laminin alpha, beta and gamma (formerly A, B1, and B2, respectively), form a cruciform structure consisting of 3 short arms, each formed by a different chain, and a long arm composed of all 3 chains. Each laminin chain is a multidomain protein encoded by a distinct gene. Several isoforms of each chain have been described. Different alpha, beta and gamma chain isomers combine to give rise to different heterotrimeric laminin isoforms which are designated by Arabic numerals in the order of their discovery, i.e. alpha1beta1gamma1 heterotrimer is laminin 1. The biological functions of the different chains and trimer molecules are largely unknown, but some of the chains have been shown to differ with respect to their tissue distribution, presumably reflecting diverse functions in vivo. This gene encodes the beta chain isoform laminin, beta 2. The beta 2 chain contains the 7 structural domains typical of beta chains of laminin, including the short alpha region. However, unlike beta 1 chain, beta 2 has a more restricted tissue distribution. It is enriched in the basement membrane of muscles at the neuromuscular junctions, kidney glomerulus and vascular smooth muscle. Transgenic mice in which the beta 2 chain gene was inactivated by homologous recombination, showed defects in the maturation of neuromuscular junctions and impairment of glomerular filtration. Alternative splicing involving a non consensus 5' splice site (gc) in the 5' UTR of this gene has been reported. It was suggested that inefficient splicing of this first intron, which does not change the protein sequence, results in a greater abundance of the unspliced form of the transcript than the spliced form. The full-length nature of the spliced transcript is not known. [provided by RefSeq, Aug 2011]

Developmental clusters: GC7
Biological processes 39 terms
Expression (TPM)
LAMB2 — as a Regulated Gene

TFs regulating LAMB2 0 TFs

Transcription factors with Perturb-seq knockdown data for LAMB2. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = LAMB2 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to LAMB2

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of LAMB2, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr3:48,847,059–48,848,224 285.3 kb Distal (>10kb) Multiome 772
chr3:48,898,423–48,899,110 234.2 kb Distal (>10kb) Multiome 739
chr3:48,918,234–48,919,609 214.2 kb Distal (>10kb) Multiome 877
chr3:48,989,537–48,991,069 143.0 kb Distal (>10kb) Multiome 552
chr3:49,003,975–49,004,995 128.6 kb Distal (>10kb) Multiome 209
chr3:49,006,738–49,008,496 125.1 kb Distal (>10kb) Multiome 955
chr3:49,017,789–49,018,870 114.6 kb Distal (>10kb) Multiome 780
chr3:49,020,066–49,022,597 111.3 kb Distal (>10kb) Multiome 1064
chr3:49,028,856–49,029,800 103.6 kb Distal (>10kb) Multiome 974
chr3:49,093,005–49,094,956 38.8 kb Distal (>10kb) Multiome 944
chr3:49,104,279–49,105,309 28.3 kb Distal (>10kb) Multiome 712
chr3:49,120,575–49,121,282 12.1 kb Distal (>10kb) Multiome 765
chr3:49,132,603–49,133,965 659 bp At TSS Multiome 652
chr3:49,166,057–49,166,586 33.3 kb Distal (>10kb) Multiome 622
chr3:49,170,896–49,171,950 38.3 kb Distal (>10kb) Multiome 781
chr3:49,276,912–49,277,398 144.0 kb Distal (>10kb) Multiome 291
chr3:49,339,607–49,340,853 207.1 kb Distal (>10kb) Multiome 1044
chr3:49,357,868–49,359,083 225.4 kb Distal (>10kb) Multiome 908
chr3:49,411,409–49,412,844 279.1 kb Distal (>10kb) Multiome 899
chr3:49,422,179–49,422,905 289.5 kb Distal (>10kb) Multiome 453
chr3:49,428,857–49,429,869 296.4 kb Distal (>10kb) Multiome 712

Genome Browser

Genomic view of the LAMB2 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr3:48,837,059 – 49,439,869
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq