Transcription factors with Perturb-seq knockdown data for KRTAP5-AS1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = KRTAP5-AS1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of KRTAP5-AS1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr11:1,564,581–1,564,769 | 8.0 kb | Proximal (<10kb) | 161 | |
| chr11:1,568,160–1,568,834 | 3.9 kb | Proximal (<10kb) | 58 | |
| chr11:1,571,012–1,571,519 | 1.2 kb | Proximal (<10kb) | 240 | |
| chr11:1,571,981–1,572,819 | at TSS | At TSS | 410 | |
| chr11:1,573,992–1,574,943 | 1.3 kb | Proximal (<10kb) | 379 |
Genomic view of the KRTAP5-AS1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.