KDELR3
KDEL endoplasmic reticulum protein retention receptor 3

This gene encodes a member of the KDEL endoplasmic reticulum protein retention receptor family. Retention of resident soluble proteins in the lumen of the endoplasmic reticulum (ER) is achieved in both yeast and animal cells by their continual retrieval from the cis-Golgi, or a pre-Golgi compartment. Sorting of these proteins is dependent on a C-terminal tetrapeptide signal, usually lys-asp-glu-leu (KDEL) in animal cells, and his-asp-glu-leu (HDEL) in S. cerevisiae. This process is mediated by a receptor that recognizes, and binds the tetrapeptide-containing protein, and returns it to the ER. In yeast, the sorting receptor encoded by a single gene, ERD2, is a seven-transmembrane protein. Unlike yeast, several human homologs of the ERD2 gene, constituting the KDEL receptor gene family, have been described. KDELR3 was the third member of the family to be identified. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]

Member of: DE-7
Biological processes 21 terms
Expression (TPM)
KDELR3 — as a Regulated Gene

TFs regulating KDELR3 0 TFs

Transcription factors with Perturb-seq knockdown data for KDELR3. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = KDELR3 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to KDELR3

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of KDELR3, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr22:38,181,365–38,182,291 286.2 kb Distal (>10kb) Multiome 676
chr22:38,201,378–38,203,636 266.2 kb Distal (>10kb) Multiome 848
chr22:38,214,397–38,215,017 253.3 kb Distal (>10kb) Multiome 382
chr22:38,272,379–38,273,237 195.1 kb Distal (>10kb) Multiome 526
chr22:38,317,171–38,317,940 150.7 kb Distal (>10kb) Multiome 524
chr22:38,319,024–38,319,874 148.5 kb Distal (>10kb) Multiome 181
chr22:38,335,940–38,336,726 131.8 kb Distal (>10kb) Multiome 297
chr22:38,353,217–38,354,166 114.6 kb Distal (>10kb) Multiome 404
chr22:38,397,757–38,399,352 69.1 kb Distal (>10kb) Multiome 345
chr22:38,455,555–38,456,345 12.0 kb Distal (>10kb) Multiome 403
chr22:38,461,291–38,461,848 6.4 kb Proximal (<10kb) Multiome 595
chr22:38,467,911–38,468,709 at TSS At TSS 481
chr22:38,505,466–38,506,961 38.4 kb Distal (>10kb) Multiome 889
chr22:38,569,664–38,571,256 102.3 kb Distal (>10kb) Multiome 559
chr22:38,655,982–38,657,104 188.4 kb Distal (>10kb) Multiome 698
chr22:38,681,730–38,682,262 213.8 kb Distal (>10kb) Multiome 947
chr22:38,700,377–38,701,744 232.9 kb Distal (>10kb) Multiome 916
chr22:38,705,151–38,706,595 237.6 kb Distal (>10kb) Multiome 821
chr22:38,755,428–38,756,383 288.0 kb Distal (>10kb) Multiome 770

Genome Browser

Genomic view of the KDELR3 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr22:38,171,365 – 38,766,383
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq