This gene belongs to the subfamily of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are RNA binding proteins and they complex with heterogeneous nuclear RNA (hnRNA). These proteins are associated with pre-mRNAs in the nucleus and appear to influence pre-mRNA processing and other aspects of mRNA metabolism and transport. While all of the hnRNPs are present in the nucleus, some seem to shuttle between the nucleus and the cytoplasm. The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene has two RRM domains that bind to RNAs. Three alternatively spliced transcript variants have been described for this gene. One of the variants is probably not translated because the transcript is a candidate for nonsense-mediated mRNA decay. The protein isoforms encoded by this gene are similar to its family member HNRPD. [provided by RefSeq, May 2011]
Transcription factors with Perturb-seq knockdown data for HNRNPDL. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = HNRNPDL upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of HNRNPDL, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr4:82,284,318–82,285,814 | 145.4 kb | Distal (>10kb) Multiome | 566 | |
| chr4:82,372,612–82,374,867 | 56.2 kb | Distal (>10kb) Multiome HiCAR | 1174 | |
| chr4:82,421,627–82,422,441 | 7.0 kb | Proximal (<10kb) | 175 | |
| chr4:82,428,720–82,431,310 | 60 bp | At TSS Multiome | 1120 | |
| chr4:82,440,403–82,441,049 | 9.9 kb | Proximal (<10kb) | 22 | |
| chr4:82,561,307–82,562,355 | 131.5 kb | Distal (>10kb) Multiome | 327 | |
| chr4:82,667,793–82,668,466 | 237.7 kb | Distal (>10kb) Multiome | 123 | |
| chr4:82,716,050–82,716,644 | 285.9 kb | Distal (>10kb) Multiome | 173 | |
| chr4:82,739,190–82,739,774 | 309.1 kb | Distal (>10kb) Multiome HiCAR | 317 |
Genomic view of the HNRNPDL locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.