Predicted to enable phosphoprotein binding activity. Predicted to be involved in neuron projection development. Predicted to be located in growth cone. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2025]
Transcription factors with Perturb-seq knockdown data for GPRIN1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = GPRIN1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of GPRIN1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr5:176,361,095–176,362,133 | 248.5 kb | Distal (>10kb) Multiome | 877 | |
| chr5:176,365,184–176,366,532 | 244.1 kb | Distal (>10kb) Multiome | 352 | |
| chr5:176,388,019–176,389,614 | 221.2 kb | Distal (>10kb) Multiome | 1052 | |
| chr5:176,415,859–176,416,971 | 193.5 kb | Distal (>10kb) Multiome | 827 | |
| chr5:176,447,162–176,449,016 | 161.9 kb | Distal (>10kb) Multiome | 859 | |
| chr5:176,536,385–176,538,671 | 72.7 kb | Distal (>10kb) Multiome | 1006 | |
| chr5:176,541,333–176,544,229 | 66.6 kb | Distal (>10kb) Multiome | 733 | |
| chr5:176,596,638–176,597,570 | 13.1 kb | Distal (>10kb) Multiome | 234 | |
| chr5:176,609,466–176,610,727 | 110 bp | At TSS Multiome | 544 | |
| chr5:176,618,956–176,619,934 | 9.2 kb | Proximal (<10kb) Multiome | 328 | |
| chr5:176,630,050–176,630,816 | 20.2 kb | Distal (>10kb) Multiome | 352 | |
| chr5:176,646,726–176,648,437 | 37.2 kb | Distal (>10kb) Multiome | 701 | |
| chr5:176,660,849–176,661,318 | 50.9 kb | Distal (>10kb) Multiome | 382 | |
| chr5:176,809,543–176,810,815 | 200.2 kb | Distal (>10kb) Multiome | 404 | |
| chr5:176,817,316–176,818,386 | 207.7 kb | Distal (>10kb) Multiome | 358 |
Genomic view of the GPRIN1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.