The protein encoded by this gene is a component of the core SMN complex, which is required for pre-mRNA splicing in the nucleus. The encoded protein is found in the nucleoplasm, in nuclear "gems" (Gemini of Cajal bodies), and in the cytoplasm. Three transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2008]
Transcription factors with Perturb-seq knockdown data for GEMIN7. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = GEMIN7 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of GEMIN7, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr19:44,800,231–44,800,829 | 278.6 kb | Distal (>10kb) Multiome | 508 | |
| chr19:44,807,965–44,809,338 | 271.1 kb | Distal (>10kb) Multiome | 652 | |
| chr19:44,844,448–44,848,668 | 234.5 kb | Distal (>10kb) Multiome | 1047 | |
| chr19:44,890,209–44,891,796 | 188.4 kb | Distal (>10kb) Multiome | 952 | |
| chr19:44,903,686–44,904,241 | 175.5 kb | Distal (>10kb) Multiome | 666 | |
| chr19:44,905,114–44,907,037 | 172.6 kb | Distal (>10kb) Multiome | 645 | |
| chr19:44,913,546–44,915,671 | 164.1 kb | Distal (>10kb) Multiome | 587 | |
| chr19:44,926,693–44,927,388 | 152.0 kb | Distal (>10kb) Multiome | 277 | |
| chr19:44,954,641–44,955,824 | 124.0 kb | Distal (>10kb) Multiome | 835 | |
| chr19:45,001,031–45,002,639 | 77.9 kb | Distal (>10kb) Multiome | 694 | |
| chr19:45,038,879–45,039,566 | 40.1 kb | Distal (>10kb) Multiome | 800 | |
| chr19:45,075,125–45,076,814 | 2.7 kb | Proximal (<10kb) Multiome | 710 | |
| chr19:45,078,897–45,080,647 | 896 bp | At TSS Multiome | 1012 | |
| chr19:45,091,042–45,093,574 | 13.8 kb | Distal (>10kb) Multiome | 959 | |
| chr19:45,177,803–45,179,711 | 99.2 kb | Distal (>10kb) Multiome | 899 | |
| chr19:45,234,200–45,234,822 | 155.3 kb | Distal (>10kb) Multiome | 105 | |
| chr19:45,250,821–45,251,491 | 172.0 kb | Distal (>10kb) Multiome | 397 | |
| chr19:45,340,431–45,341,201 | 261.5 kb | Distal (>10kb) Multiome | 363 | |
| chr19:45,370,064–45,371,122 | 291.4 kb | Distal (>10kb) Multiome | 592 |
Genomic view of the GEMIN7 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.