GAPDH
glyceraldehyde-3-phosphate dehydrogenase | GAPD

This gene encodes a member of the glyceraldehyde-3-phosphate dehydrogenase protein family. The encoded protein has been identified as a moonlighting protein based on its ability to perform mechanistically distinct functions. The product of this gene catalyzes an important energy-yielding step in carbohydrate metabolism, the reversible oxidative phosphorylation of glyceraldehyde-3-phosphate in the presence of inorganic phosphate and nicotinamide adenine dinucleotide (NAD). The encoded protein has additionally been identified to have uracil DNA glycosylase activity in the nucleus. Also, this protein contains a peptide that has antimicrobial activity against E. coli, P. aeruginosa, and C. albicans. Studies of a similar protein in mouse have assigned a variety of additional functions including nitrosylation of nuclear proteins, the regulation of mRNA stability, and acting as a transferrin receptor on the cell surface of macrophage. Many pseudogenes similar to this locus are present in the human genome. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2014]

Member of: DE-1 DE-1.35
Biological processes 56 terms
GAIT complex (GO:0097452)NAD binding (GO:0051287)NADP binding (GO:0050661)antifungal innate immune response (GO:0061760)antimicrobial humoral immune response mediated by antimicrobial peptide (GO:0061844)aspartic-type endopeptidase inhibitor activity (GO:0019828)canonical glycolysis (GO:0061621)canonical glycolysis (GO:0061621)cellular response to type II interferon (GO:0071346)cytoplasm (GO:0005737)cytoplasm (GO:0005737)cytoskeleton (GO:0005856)cytosol (GO:0005829)cytosol (GO:0005829)cytosol (GO:0005829)cytosol (GO:0005829)cytosol (GO:0005829)disordered domain specific binding (GO:0097718)extracellular exosome (GO:0070062)gluconeogenesis (GO:0006094)glucose metabolic process (GO:0006006)glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity (GO:0004365)glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity (GO:0004365)glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity (GO:0004365)glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity (GO:0004365)glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity (GO:0004365)glycolytic process (GO:0006096)glycolytic process (GO:0006096)identical protein binding (GO:0042802)lipid droplet (GO:0005811)membrane (GO:0016020)membrane (GO:0016020)microtubule binding (GO:0008017)microtubule cytoskeleton (GO:0015630)microtubule cytoskeleton organization (GO:0000226)negative regulation of formation of translation preinitiation complex (GO:1901194)negative regulation of translation (GO:0017148)negative regulation of translation (GO:0017148)neuron apoptotic process (GO:0051402)nucleus (GO:0005634)nucleus (GO:0005634)nucleus (GO:0005634)nucleus (GO:0005634)oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (GO:0016620)peptidyl-cysteine S-nitrosylase activity (GO:0035605)peptidyl-cysteine S-nitrosylase activity (GO:0035605)peptidyl-cysteine S-trans-nitrosylation (GO:0035606)perinuclear region of cytoplasm (GO:0048471)plasma membrane (GO:0005886)positive regulation of canonical NF-kappaB signal transduction (GO:0043123)positive regulation of type I interferon production (GO:0032481)protein binding (GO:0005515)protein stabilization (GO:0050821)regulation of macroautophagy (GO:0016241)ribonucleoprotein complex (GO:1990904)vesicle (GO:0031982)
Expression (TPM)
GAPDH — as a Regulated Gene

TFs regulating GAPDH 0 TFs

Transcription factors with Perturb-seq knockdown data for GAPDH. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = GAPDH upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to GAPDH

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of GAPDH, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr12:6,278,466–6,279,375 255.7 kb Distal (>10kb) Multiome 655
chr12:6,310,091–6,311,512 223.8 kb Distal (>10kb) Multiome 645
chr12:6,322,926–6,323,961 211.1 kb Distal (>10kb) Multiome 536
chr12:6,329,238–6,330,028 205.0 kb Distal (>10kb) Multiome 135
chr12:6,335,766–6,337,493 197.9 kb Distal (>10kb) Multiome 962
chr12:6,341,619–6,342,234 192.3 kb Distal (>10kb) Multiome 657
chr12:6,363,292–6,364,138 170.9 kb Distal (>10kb) Multiome 718
chr12:6,370,899–6,371,535 163.2 kb Distal (>10kb) Multiome 572
chr12:6,375,204–6,377,302 159.0 kb Distal (>10kb) Multiome 601
chr12:6,383,790–6,384,442 150.4 kb Distal (>10kb) Multiome 812
chr12:6,451,305–6,451,838 83.1 kb Distal (>10kb) Multiome 535
chr12:6,469,922–6,471,399 63.7 kb Distal (>10kb) Multiome 930
chr12:6,492,998–6,494,331 41.2 kb Distal (>10kb) Multiome HiCAR 936
chr12:6,533,253–6,535,726 204 bp At TSS Multiome 1131
chr12:6,537,710–6,538,506 3.2 kb Proximal (<10kb) 310
chr12:6,538,996–6,539,244 4.5 kb Proximal (<10kb) 236
chr12:6,539,914–6,540,883 6.2 kb Proximal (<10kb) Multiome HiCAR 427
chr12:6,554,111–6,554,621 19.8 kb Distal (>10kb) Multiome HiCAR 407
chr12:6,555,532–6,556,318 21.6 kb Distal (>10kb) Multiome HiCAR 551
chr12:6,567,822–6,568,719 33.9 kb Distal (>10kb) Multiome HiCAR 837
chr12:6,605,947–6,607,790 73.0 kb Distal (>10kb) Multiome 774
chr12:6,613,155–6,614,551 79.6 kb Distal (>10kb) Multiome 810
chr12:6,620,128–6,620,868 86.0 kb Distal (>10kb) Multiome 239
chr12:6,662,802–6,663,663 128.7 kb Distal (>10kb) Multiome 868
chr12:6,688,517–6,690,027 154.9 kb Distal (>10kb) Multiome 943
chr12:6,699,959–6,700,887 165.9 kb Distal (>10kb) Multiome 263
chr12:6,723,658–6,724,773 189.6 kb Distal (>10kb) Multiome 1065
chr12:6,752,554–6,754,332 219.0 kb Distal (>10kb) Multiome 975
chr12:6,763,677–6,764,983 229.9 kb Distal (>10kb) Multiome 570
chr12:6,765,172–6,767,791 231.8 kb Distal (>10kb) Multiome 824
chr12:6,768,329–6,769,331 234.6 kb Distal (>10kb) Multiome 249
chr12:6,778,736–6,779,459 244.5 kb Distal (>10kb) Multiome 777
chr12:6,821,268–6,822,155 287.2 kb Distal (>10kb) Multiome 299
chr12:6,825,458–6,825,915 291.2 kb Distal (>10kb) Multiome 404
chr12:6,828,101–6,829,966 295.1 kb Distal (>10kb) Multiome 689

Genome Browser

Genomic view of the GAPDH locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr12:6,268,466 – 6,839,966
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq