This gene encodes a member of the glyceraldehyde-3-phosphate dehydrogenase protein family. The encoded protein has been identified as a moonlighting protein based on its ability to perform mechanistically distinct functions. The product of this gene catalyzes an important energy-yielding step in carbohydrate metabolism, the reversible oxidative phosphorylation of glyceraldehyde-3-phosphate in the presence of inorganic phosphate and nicotinamide adenine dinucleotide (NAD). The encoded protein has additionally been identified to have uracil DNA glycosylase activity in the nucleus. Also, this protein contains a peptide that has antimicrobial activity against E. coli, P. aeruginosa, and C. albicans. Studies of a similar protein in mouse have assigned a variety of additional functions including nitrosylation of nuclear proteins, the regulation of mRNA stability, and acting as a transferrin receptor on the cell surface of macrophage. Many pseudogenes similar to this locus are present in the human genome. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2014]
Transcription factors with Perturb-seq knockdown data for GAPDH. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = GAPDH upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of GAPDH, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr12:6,278,466–6,279,375 | 255.7 kb | Distal (>10kb) Multiome | 655 | |
| chr12:6,310,091–6,311,512 | 223.8 kb | Distal (>10kb) Multiome | 645 | |
| chr12:6,322,926–6,323,961 | 211.1 kb | Distal (>10kb) Multiome | 536 | |
| chr12:6,329,238–6,330,028 | 205.0 kb | Distal (>10kb) Multiome | 135 | |
| chr12:6,335,766–6,337,493 | 197.9 kb | Distal (>10kb) Multiome | 962 | |
| chr12:6,341,619–6,342,234 | 192.3 kb | Distal (>10kb) Multiome | 657 | |
| chr12:6,363,292–6,364,138 | 170.9 kb | Distal (>10kb) Multiome | 718 | |
| chr12:6,370,899–6,371,535 | 163.2 kb | Distal (>10kb) Multiome | 572 | |
| chr12:6,375,204–6,377,302 | 159.0 kb | Distal (>10kb) Multiome | 601 | |
| chr12:6,383,790–6,384,442 | 150.4 kb | Distal (>10kb) Multiome | 812 | |
| chr12:6,451,305–6,451,838 | 83.1 kb | Distal (>10kb) Multiome | 535 | |
| chr12:6,469,922–6,471,399 | 63.7 kb | Distal (>10kb) Multiome | 930 | |
| chr12:6,492,998–6,494,331 | 41.2 kb | Distal (>10kb) Multiome HiCAR | 936 | |
| chr12:6,533,253–6,535,726 | 204 bp | At TSS Multiome | 1131 | |
| chr12:6,537,710–6,538,506 | 3.2 kb | Proximal (<10kb) | 310 | |
| chr12:6,538,996–6,539,244 | 4.5 kb | Proximal (<10kb) | 236 | |
| chr12:6,539,914–6,540,883 | 6.2 kb | Proximal (<10kb) Multiome HiCAR | 427 | |
| chr12:6,554,111–6,554,621 | 19.8 kb | Distal (>10kb) Multiome HiCAR | 407 | |
| chr12:6,555,532–6,556,318 | 21.6 kb | Distal (>10kb) Multiome HiCAR | 551 | |
| chr12:6,567,822–6,568,719 | 33.9 kb | Distal (>10kb) Multiome HiCAR | 837 | |
| chr12:6,605,947–6,607,790 | 73.0 kb | Distal (>10kb) Multiome | 774 | |
| chr12:6,613,155–6,614,551 | 79.6 kb | Distal (>10kb) Multiome | 810 | |
| chr12:6,620,128–6,620,868 | 86.0 kb | Distal (>10kb) Multiome | 239 | |
| chr12:6,662,802–6,663,663 | 128.7 kb | Distal (>10kb) Multiome | 868 | |
| chr12:6,688,517–6,690,027 | 154.9 kb | Distal (>10kb) Multiome | 943 | |
| chr12:6,699,959–6,700,887 | 165.9 kb | Distal (>10kb) Multiome | 263 | |
| chr12:6,723,658–6,724,773 | 189.6 kb | Distal (>10kb) Multiome | 1065 | |
| chr12:6,752,554–6,754,332 | 219.0 kb | Distal (>10kb) Multiome | 975 | |
| chr12:6,763,677–6,764,983 | 229.9 kb | Distal (>10kb) Multiome | 570 | |
| chr12:6,765,172–6,767,791 | 231.8 kb | Distal (>10kb) Multiome | 824 | |
| chr12:6,768,329–6,769,331 | 234.6 kb | Distal (>10kb) Multiome | 249 | |
| chr12:6,778,736–6,779,459 | 244.5 kb | Distal (>10kb) Multiome | 777 | |
| chr12:6,821,268–6,822,155 | 287.2 kb | Distal (>10kb) Multiome | 299 | |
| chr12:6,825,458–6,825,915 | 291.2 kb | Distal (>10kb) Multiome | 404 | |
| chr12:6,828,101–6,829,966 | 295.1 kb | Distal (>10kb) Multiome | 689 |
Genomic view of the GAPDH locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.