Predicted to be involved in lipid metabolic process. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for FAM135A. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = FAM135A upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of FAM135A, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr6:70,281,923–70,283,789 | 130.3 kb | Distal (>10kb) Multiome | 386 | |
| chr6:70,412,616–70,414,468 | 110 bp | At TSS Multiome | 868 | |
| chr6:70,566,096–70,567,415 | 153.4 kb | Distal (>10kb) Multiome | 830 | |
| chr6:70,667,079–70,668,698 | 254.4 kb | Distal (>10kb) Multiome | 889 |
Genomic view of the FAM135A locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.