Predicted to enable 3'-5' exonuclease activity; metal ion binding activity; and nucleic acid binding activity. Predicted to be involved in nucleobase-containing compound metabolic process. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for EXD3. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = EXD3 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of EXD3, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr9:137,129,244–137,130,499 | 293.3 kb | Distal (>10kb) Multiome | 823 | |
| chr9:137,167,984–137,170,155 | 253.7 kb | Distal (>10kb) Multiome | 560 | |
| chr9:137,188,099–137,189,538 | 234.4 kb | Distal (>10kb) Multiome | 954 | |
| chr9:137,200,175–137,201,689 | 222.3 kb | Distal (>10kb) Multiome | 856 | |
| chr9:137,205,371–137,205,975 | 217.5 kb | Distal (>10kb) Multiome | 758 | |
| chr9:137,221,373–137,224,294 | 201.2 kb | Distal (>10kb) Multiome | 843 | |
| chr9:137,227,249–137,228,051 | 195.5 kb | Distal (>10kb) Multiome | 533 | |
| chr9:137,236,161–137,237,143 | 186.5 kb | Distal (>10kb) Multiome | 748 | |
| chr9:137,239,991–137,242,933 | 182.1 kb | Distal (>10kb) Multiome | 1117 | |
| chr9:137,243,659–137,245,307 | 178.9 kb | Distal (>10kb) Multiome | 471 | |
| chr9:137,253,801–137,256,036 | 167.9 kb | Distal (>10kb) Multiome | 843 | |
| chr9:137,280,593–137,281,861 | 142.0 kb | Distal (>10kb) Multiome | 223 | |
| chr9:137,294,859–137,296,916 | 127.6 kb | Distal (>10kb) Multiome | 501 | |
| chr9:137,300,591–137,303,141 | 120.7 kb | Distal (>10kb) Multiome HiCAR | 790 | |
| chr9:137,316,104–137,316,916 | 106.9 kb | Distal (>10kb) Multiome | 395 | |
| chr9:137,406,843–137,407,556 | 16.0 kb | Distal (>10kb) Multiome | 427 | |
| chr9:137,422,664–137,424,024 | 119 bp | At TSS Multiome | 896 | |
| chr9:137,441,270–137,441,970 | 18.4 kb | Distal (>10kb) Multiome | 568 | |
| chr9:137,453,153–137,455,543 | 30.9 kb | Distal (>10kb) Multiome | 727 | |
| chr9:137,458,468–137,459,887 | 36.2 kb | Distal (>10kb) Multiome | 613 | |
| chr9:137,461,555–137,462,160 | 38.7 kb | Distal (>10kb) Multiome | 284 | |
| chr9:137,551,136–137,552,512 | 128.6 kb | Distal (>10kb) Multiome | 756 | |
| chr9:137,578,523–137,579,553 | 155.8 kb | Distal (>10kb) Multiome | 910 | |
| chr9:137,589,526–137,591,323 | 167.5 kb | Distal (>10kb) Multiome | 623 | |
| chr9:137,604,440–137,607,003 | 182.3 kb | Distal (>10kb) Multiome | 675 | |
| chr9:137,618,064–137,619,880 | 195.8 kb | Distal (>10kb) Multiome | 867 |
Genomic view of the EXD3 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.