EPHX3
epoxide hydrolase 3 | FLJ22408, ABHD9

Enables epoxide hydrolase activity. Involved in epoxide metabolic process. Located in intracellular membrane-bounded organelle and membrane. [provided by Alliance of Genome Resources, Apr 2025]

Developmental clusters: GC4
Biological processes 8 terms
Expression (TPM)
EPHX3 — as a Regulated Gene

TFs regulating EPHX3 0 TFs

Transcription factors with Perturb-seq knockdown data for EPHX3. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = EPHX3 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to EPHX3

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of EPHX3, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr19:14,979,199–14,980,219 253.6 kb Distal (>10kb) Multiome 147
chr19:15,010,607–15,011,356 222.5 kb Distal (>10kb) Multiome 122
chr19:15,073,077–15,073,718 160.1 kb Distal (>10kb) Multiome 204
chr19:15,106,942–15,107,576 126.1 kb Distal (>10kb) Multiome 339
chr19:15,113,323–15,113,828 119.8 kb Distal (>10kb) Multiome 116
chr19:15,124,546–15,126,107 107.7 kb Distal (>10kb) Multiome 949
chr19:15,177,520–15,178,026 55.7 kb Distal (>10kb) Multiome HiCAR 499
chr19:15,180,886–15,181,623 52.2 kb Distal (>10kb) Multiome 355
chr19:15,195,187–15,196,375 37.3 kb Distal (>10kb) Multiome 408
chr19:15,199,629–15,201,437 33.4 kb Distal (>10kb) Multiome 398
chr19:15,222,727–15,224,168 10.0 kb Proximal (<10kb) Multiome 521
chr19:15,231,632–15,233,858 205 bp At TSS Multiome 414
chr19:15,324,741–15,325,392 91.5 kb Distal (>10kb) Multiome 183
chr19:15,331,471–15,332,992 99.1 kb Distal (>10kb) Multiome 641
chr19:15,378,833–15,380,802 146.4 kb Distal (>10kb) Multiome 913
chr19:15,418,493–15,419,441 185.7 kb Distal (>10kb) Multiome 892
chr19:15,432,448–15,433,787 199.4 kb Distal (>10kb) Multiome 766
chr19:15,449,146–15,450,281 216.4 kb Distal (>10kb) Multiome 446
chr19:15,451,962–15,453,427 219.1 kb Distal (>10kb) Multiome 428
chr19:15,456,680–15,457,763 223.7 kb Distal (>10kb) Multiome 240

Genome Browser

Genomic view of the EPHX3 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr19:14,969,199 – 15,467,763
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq