Transcription factors with Perturb-seq knockdown data for ENSG00000289055. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ENSG00000289055 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ENSG00000289055, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr1:244,047,471–244,050,335 | at TSS | At TSS | 939 | |
| chr1:244,050,906–244,051,470 | 2.7 kb | Proximal (<10kb) | 219 | |
| chr1:244,052,069–244,052,658 | 3.8 kb | Proximal (<10kb) | 194 | |
| chr1:244,054,108–244,055,007 | 5.9 kb | Proximal (<10kb) | 151 | |
| chr1:244,056,664–244,056,907 | 8.4 kb | Proximal (<10kb) | 37 |
Genomic view of the ENSG00000289055 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.