Transcription factors with Perturb-seq knockdown data for ENSG00000288968. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ENSG00000288968 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ENSG00000288968, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr9:87,404,974–87,405,548 | 5.3 kb | Proximal (<10kb) | 34 | |
| chr9:87,407,470–87,408,874 | 2.0 kb | Proximal (<10kb) | 154 | |
| chr9:87,410,180–87,411,083 | at TSS | At TSS | 221 | |
| chr9:87,412,472–87,412,823 | 1.6 kb | Proximal (<10kb) | 8 |
Genomic view of the ENSG00000288968 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.