Transcription factors with Perturb-seq knockdown data for ENSG00000285543. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ENSG00000285543 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ENSG00000285543, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr16:10,039,232–10,039,818 | 188.1 kb | Distal (>10kb) Multiome | 107 | |
| chr16:10,180,776–10,182,442 | 45.8 kb | Distal (>10kb) Multiome | 514 | |
| chr16:10,282,522–10,283,683 | 55.8 kb | Distal (>10kb) Multiome | 60 | |
| chr16:10,385,788–10,386,451 | 158.5 kb | Distal (>10kb) Multiome | 964 |
Genomic view of the ENSG00000285543 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.