Transcription factors with Perturb-seq knockdown data for ENSG00000254864. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ENSG00000254864 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ENSG00000254864, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr11:7,571,061–7,571,376 | 669 bp | At TSS | 21 | |
| chr11:7,571,498–7,572,368 | at TSS | At TSS | 461 | |
| chr11:7,573,550–7,574,414 | 1.5 kb | Proximal (<10kb) | 486 | |
| chr11:7,576,502–7,577,152 | 4.5 kb | Proximal (<10kb) | 103 | |
| chr11:7,577,934–7,578,293 | 5.9 kb | Proximal (<10kb) | 160 |
Genomic view of the ENSG00000254864 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.