Chemokines are a group of small (approximately 8 to 14 kD), mostly basic, structurally related molecules that regulate cell trafficking of various types of leukocytes through interactions with a subset of 7-transmembrane, G protein-coupled receptors. Chemokines also play fundamental roles in the development, homeostasis, and function of the immune system, and they have effects on cells of the central nervous system as well as on endothelial cells involved in angiogenesis or angiostasis. Chemokines are divided into 2 major subfamilies, CXC and CC. This antimicrobial gene is a CXC member of the chemokine superfamily. Its encoded protein induces a chemotactic response in activated T-cells and is the dominant ligand for CXC receptor-3. The gene encoding this protein contains 4 exons and at least three polyadenylation signals which might reflect cell-specific regulation of expression. IFN-gamma is a potent inducer of transcription of this gene. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2014]
Transcription factors with Perturb-seq knockdown data for CXCL11. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CXCL11 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CXCL11, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr4:75,939,639–75,941,475 | 100.4 kb | Distal (>10kb) Multiome | 762 | |
| chr4:75,990,621–75,991,159 | 50.5 kb | Distal (>10kb) Multiome | 782 | |
| chr4:76,049,940–76,050,552 | 8.5 kb | Proximal (<10kb) | 10 | |
| chr4:76,147,405–76,148,870 | 107.1 kb | Distal (>10kb) Multiome | 1076 | |
| chr4:76,212,911–76,214,625 | 172.4 kb | Distal (>10kb) Multiome | 798 | |
| chr4:76,251,398–76,252,255 | 210.3 kb | Distal (>10kb) Multiome | 710 | |
| chr4:76,305,965–76,307,583 | 265.2 kb | Distal (>10kb) Multiome | 793 |
Genomic view of the CXCL11 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.